TaxMan specifications

Information


Unique identifier OMICS_33042
Name TaxMan
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Database management system PostgreSQL
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability Stable
Requirements
BioPerl, CPAN, PostgreSQL, BLAST, EMBOSS, phrap, POA
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Martin Jones

Publication for TaxMan

TaxMan citation

library_books

TaxMan: a taxonomic database manager

2006
BMC Bioinformatics
PMCID: 1766369
PMID: 17176465
DOI: 10.1186/1471-2105-7-536

[…] TaxMan extracts DNA sequence data from GenBank format [] files on the basis of either annotation or sequence similarity to a database of identified genes. The NCBI Entrez service [] allows a user to q […]

TaxMan institution(s)
Institute of Evolutionary Biology, King's Buildings, Ashworth Laboratories, Edinburgh, UK
TaxMan funding source(s)
Supported by a BBSRC studentship.

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