TIPP specifications

Unique identifier:
OMICS_12989
Software type:
Package/Module
Restrictions to use:
None
Output data:
The taxonomic lineage of `q` or an abundance profile estimated on `Q`
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
Taxon Identification and Phylogenetic Profiling
Interface:
Command line interface
Input data:
A query sequence `q` or a set of query sequences `Q`
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
Java, Blast

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TIPP support

Documentation

Maintainer

  • Tandy Warnow <>

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Publications

Institution(s)

Department of Computer Science, University of Texas, Austin, TX, USA; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA; Department of Bioengineering, The University of Illinois, Urbana, IL, USA; Department of Computer Science, University of Illinois, Urbana, IL, USA

Funding source(s)

Guggenheim Foundation Fellowship; National Science Foundation, grants DBI-1062335, DBI-1461364 and DEB 0733029; HHMI International Predoctoral Fellowship; iPlant Collaborative U.S. National Science Foundation, grant DBI-1265383; National Institutes of Health grant, R01-AI-100947; US National Science Foundation, IR/D program.

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