Taxy-Pro specifications

Information


Unique identifier OMICS_10705
Name Taxy-Pro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Peter Meinicke <>

Publication for Taxy-Pro

Taxy-Pro in publications

 (3)
PMCID: 5924777
PMID: 29740407
DOI: 10.3389/fmicb.2018.00749

[…] smart, taxonomer and virana), or hours (19 workflows: giant virus finder, gottcha, imsa, megan, mepic, metashot, metavir 2, nbc, provide, readscan, rega typing tool, riems, rins, slim, surpi, taxy-pro, “unknown pathogens from mixed clinical samples,” vip and viromescan), or even days (5 workflows: exhaustive iterative assembly, viralfusionseq, virfind, virusfinder and virusseq)., for 17 […]

PMCID: 4459075
PMID: 26056565
DOI: 10.1186/s40168-015-0086-5

[…] size selection, we next asked if certain taxa were differentially represented across the samples to see if this would point to a possible reason for library sequence bias. we used taxy [] as well as taxy-pro [] as part of the comet web server [] to do a fast preliminary comparison of taxa abundance across the three different samples. taxy calculates k-mer frequencies for the dataset […]

PMCID: 4139848
PMID: 25026170
DOI: 10.3390/ijms150712364

[…] different pfam families from our database. , as an exception, we did not apply this procedure to virus-enriched metagenomes, i.e., datasets with a high fraction of viral dna (>20% as measured by taxy-pro). the total number of datasets according to habitat categories can be found in . a csv-formatted list containing the metagenome identifiers and habitat labels as used in our evaluation […]


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Taxy-Pro institution(s)
Department of Bioinformatics, Institute for Microbiology and Genetics, University of Göttingen, Göttingen, Germany
Taxy-Pro funding source(s)
Grants from the Deutsche Forschungsgemeinschaft (ME 3138 and LI 2050)

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