Taxy-Pro statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Taxy-Pro
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Homology-based taxonomic classification chevron_right
Want to access the full stats & trends on this tool?

Taxy-Pro specifications

Information


Unique identifier OMICS_10705
Name Taxy-Pro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Peter Meinicke

Publication for Taxy-Pro

Taxy-Pro citations

 (3)
library_books

Overview of Virus Metagenomic Classification Methods and Their Biological Applications

2018
Front Microbiol
PMCID: 5924777
PMID: 29740407
DOI: 10.3389/fmicb.2018.00749

[…] MetLab, SMART, Taxonomer and Virana), or hours (19 workflows: Giant Virus Finder, GOTTCHA, IMSA, MEGAN, MePIC, MetaShot, Metavir 2, NBC, ProViDE, Readscan, Rega Typing Tool, RIEMS, RINS, SLIM, SURPI, Taxy-Pro, “Unknown pathogens from mixed clinical samples,” VIP and ViromeScan), or even days (5 workflows: Exhaustive Iterative Assembly, ViralFusionSeq, VirFind, VirusFinder and VirusSeq). […]

library_books

Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries

2015
Microbiome
PMCID: 4459075
PMID: 26056565
DOI: 10.1186/s40168-015-0086-5

[…] ng that 16S rRNA gene content tracks well with genomic content in large-insert cosmid libraries. Both of our approaches provided similar results, and both were in agreement with percent GC, Taxy, and Taxy-Pro results, all of which provide compelling evidence that cosmid library biases are not due to fragmentation of AT-rich sequences during the cloning process. […]

library_books

Exploring Neighborhoods in the Metagenome Universe

2014
Int J Mol Sci
PMCID: 4139848
PMID: 25026170
DOI: 10.3390/ijms150712364

[…] an 400 different Pfam families from our database. As an exception, we did not apply this procedure to virus-enriched metagenomes, i.e., datasets with a high fraction of viral DNA (>20% as measured by Taxy-Pro). The total number of datasets according to habitat categories can be found in . A CSV-formatted list containing the metagenome identifiers and habitat labels as used in our evaluation can be […]


Want to access the full list of citations?
Taxy-Pro institution(s)
Department of Bioinformatics, Institute for Microbiology and Genetics, University of Göttingen, Göttingen, Germany
Taxy-Pro funding source(s)
Grants from the Deutsche Forschungsgemeinschaft (ME 3138 and LI 2050)

Taxy-Pro reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Taxy-Pro