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TBLASTN specifications

Information


Unique identifier OMICS_00999
Name TBLASTN
Alternative name Translated BLAST
Interface Web user interface
Restrictions to use None
Input data Protein sequences
Input format FASTA
Output data Database sequences encoding proteins similar to the input
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Publication for Translated BLAST

TBLASTN citations

 (4005)
library_books

Identification and tissue distribution of chemosensory protein and odorant binding protein genes in Tropidothorax elegans Distant (Hemiptera: Lygaeidae)

2018
Sci Rep
PMCID: 5958050
PMID: 29773848
DOI: 10.1038/s41598-018-26137-6

[…] ts and 93,940 (mean length 667.34 bp) unigenes with N50 length of 1,545 and 1,046 bp. We obtained 33,079 unigenes that were longer than 500 bp, which accounted for 35.21% of all unigenes (Table ).The tBLASTn results showed 19 unigenes encoding putative OBP genes (GenBank Accession Nos. MF593898–MF593916). Of the 19 TeleOBPs that were identified, 17 TeleOBPs had intact ORFs that were 140–383 aa in […]

library_books

AID/APOBEC like cytidine deaminases are ancient innate immune mediators in invertebrates

2018
Nat Commun
PMCID: 5956068
PMID: 29769532
DOI: 10.1038/s41467-018-04273-x

[…] To determine if these AID/APOBEC-like deaminases arose prior to the last common ancestor of deuterostomes, the SpAIDL proteins were used to query protostome genome sequences with tBLASTN. Two hits emerged from the genome and transcriptome of the brachiopod Lingula anatina, hereafter referred to as L. anatina AID-like 1 and 2 (LaAIDL1 and LaAIDL2). These genes encode proteins w […]

library_books

Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes

2018
PMCID: 5955484
PMID: 29638186
DOI: 10.1080/21505594.2018.1460979

[…] ng described methods []. Our assembly of the pig sequences was also aided by available sequences of bovine Muc5ac and Muc5b. We also used a method to identify shorter peptides of the two mucins where tblastn [] was used to search Sus scrofa RNA-Seq data, using bovine mucins as queries. The final sequences of S. scrofa Muc5ac and Muc5b used in this project are not entirely complete and are not guar […]

library_books

Evolutionary instability of CUG Leu in the genetic code of budding yeasts

2018
Nat Commun
PMCID: 5951914
PMID: 29760453
DOI: 10.1038/s41467-018-04374-7

[…] demonstrated killer activity) located in yeast nuclear genomes, we first constructed a database of known yeast VLEs, (Supplementary Table ). Proteins encoded by these elements were used as queries in TBLASTN searches against a database of all 54 fungal genomes, and potential pseudogenes were then tested for reciprocal BLASTX hits to VLE proteins. […]

library_books

A double helical motif in OCIAD2 is essential for its localization, interactions and STAT3 activation

2018
Sci Rep
PMCID: 5943604
PMID: 29743632
DOI: 10.1038/s41598-018-25667-3

[…] For identification of ociad2 in whale shark (Rhincodon typus), we performed a tblastn (https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=tblastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome) search against the genome of whale shark using elephant shark (Callorhinchus milii) OCIAD2 ( […]

library_books

Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats

2018
PLoS One
PMCID: 5940233
PMID: 29738547
DOI: 10.1371/journal.pone.0196995

[…] of raw reads were de novo assembled into contigs using CLC Genomics Workbench 5.5.1 (CLC Bio., Aarhus, Denmark) and MIRA3 Assembler []. To obtain a plastid consensus sequence, contigs were sorted by tBLASTn (e-value: 1e-10) using the protein sequence of red algal plastid genes as a reference (i.e. Chondrus crispus, Calliarthron tuberculosum) [, ]. After the reassembly process, we obtained the cir […]

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TBLASTN institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

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