TBLASTN pipeline

TBLASTN specifications

Information


Unique identifier OMICS_00999
Name TBLASTN
Alternative name Translated BLAST
Interface Web user interface
Restrictions to use None
Input data Protein sequences
Input format FASTA
Output data Database sequences encoding proteins similar to the input
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Publication for Translated BLAST

TBLASTN IN pipelines

 (194)
2018
PMCID: 5755439
PMID: 29304732
DOI: 10.1186/s12864-017-4421-z

[…] predicted gene sequences were analyzed for homology by using blastx with a p value threshold of <10−10. homologs of pheromone precursors were searched among the genome of p. tuoliensis via tblastn of bioedit program [52]. genes and their conserved motifs were identified with pfam 30.0 searches (http://pfam.xfam.org/). previously reported pheromone receptors of mushroom species, i.e., […]

2018
PMCID: 5771471
PMID: 28757112
DOI: 10.1016/j.ydbio.2017.07.023

[…] are the only population of smedwi-1+ve stem cells capable of multiple rounds of cell division and hence self-renewal in s. mediterranea., s. mediterranea condensin orthologs were identified by tblastn against the planarian transcriptome and genome (robb et al., 2008, robb et al., 2015) using condensin protein sequences from drosophila melanogaster, homo sapiens and mus musculus as queries. […]

2018
PMCID: 5800845
PMID: 29405116
DOI: 10.7554/eLife.32808.045

[…] and paris centre-sud ethic committee authorization numbers are 2012–0052, −0053, and −0054., astyanax mexicanus sequences similar to pomcb, pomca, agrp, it, cart3, npy, avt and hcrt were obtained by tblastn searches using danio rerio sequences on the a. mexicanus est assembly or developmental transcriptome contig sequences [available […]

2018
PMCID: 5803895
PMID: 29415704
DOI: 10.1186/s12896-017-0412-z

[…] databases were generated using the ncbi blast+ suite, and queried through the prfectblast java front end [21] (blast+ version 2.4.0) with an in-house viral protein database (see below) through tblastn searches. search results with an e-value <0.1 were further investigated by comparing translated sequences to the ncbi conserved domain database (cdd) [22] to identify domains that could […]

2018
PMCID: 5805349
PMID: 29420618
DOI: 10.1371/journal.pone.0192653

[…] using default settings. in order to find putative khs sequences in different n. haematococca mps, the pblast algorithm with n. haematococca mps i, iv, v, and vi as search set was applied. blastn and tblastn options were selected with the nucleotide collection (nr/nt). a multiple sequence alignment of selected proteins was performed with the clustal omega sequence alignment tool. the amino acid […]

TBLASTN institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

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