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TBpred specifications

Information


Unique identifier OMICS_06629
Name TBpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


Information


Unique identifier OMICS_06629
Name TBpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for TBpred

TBpred citations

 (7)
library_books

Cytosolic Proteome Profiling of Aminoglycosides Resistant Mycobacterium tuberculosis Clinical Isolates Using MALDI TOF/MS

2016
Front Microbiol
PMCID: 5108770
PMID: 27895634
DOI: 10.3389/fmicb.2016.01816

[…] cytosolic proteins of AK and KM resistant M. tuberculosis using proteomic and bioinformatic approach. Among the 19 over expressed proteins, 13 with their defined roles and six with unknown functions. TBpred predicted most of the proteins belong to cytoplasmic class. Molecular docking of these six hypothetical proteins (Rv2623, Rv1636, Rv1360, Rv2140c, Rv2185c, and Rv3208A) showed that AK and KM in […]

library_books

In Silico identification of M. TB proteins with diagnostic potential

2013
BMC Immunol
PMCID: 3582449
PMID: 23458073
DOI: 10.1186/1471-2172-14-S1-S9

[…] 122/97, M. smegmatis (Ms) and M. avium (Ma) were made with local sequence alignment tools: tfastax from FASTA 36.3.4 [,] and tblastn from BLAST 2.2.25+ [].Subcellular localization was predicted using Tbpred, SignalP and PSort servers [-]HLAPred server was used to carry out the prediction of T cell epitopes corresponding to the selected proteins of MTB H37Rv, and the “Population Coverage Calculatio […]

call_split

In silico identification of common epitopes from pathogenic mycobacteria

2013
BMC Immunol
PMCID: 3582421
PMID: 23458668
DOI: 10.1186/1471-2172-14-S1-S6
call_split See protocol

[…] ed using the report of the identification and localization of 1044 MTB proteins [].Subcelular localization of proteins that did not appear in the report was predicted using three servers: PSORTb [] , TBpred, [] and SignalP []. […]

library_books

Molecular Cloning, Characterization and Expression Analysis of Two Members of the Pht1 Family of Phosphate Transporters in Glycine max

2011
PLoS One
PMCID: 3115949
PMID: 21698287
DOI: 10.1371/journal.pone.0019752

[…] ANTHEPROT , Lasergene version 7.0.1 and DNAMAN version 6.0.3.93 software. Transmembrane regions and subcellular localization were predicted by HMMTOP (http://www.enzim.hu/hmmtop/index.html) and the TBpred prediction server (http://www.imtech.res.in/raghava/tbpred/), respectively. We used ScanProsite to scan the protein sequences for the occurrence of patterns stored in the PROSITE database . Th […]

library_books

Molecular modeling and in silico characterization of Mycobacterium tuberculosis TlyA: Possible misannotation of this tubercle bacilli hemolysin

2011
BMC Struct Biol
PMCID: 3072309
PMID: 21443791
DOI: 10.1186/1472-6807-11-16

[…] rver [] was used to predict the presence of the signal peptide and transmembrane α-helices within the M. tuberculosis TlyA amino acid sequence. TlyA's subcellular localization was predicted using the TBpred server [], a specific tool for mycobacterial proteins. Results were compared to subcellular localization predictions obtained from Gpos-PLoc [], PSORTb v2.0.4 [], PA-SUB [], CELLO v2.5 [], LOCt […]

call_split

Validating subcellular localization prediction tools with mycobacterial proteins

2009
BMC Bioinformatics
PMCID: 2685389
PMID: 19422713
DOI: 10.1186/1471-2105-10-134
call_split See protocol

[…] The mycobacterial protein sequence data set used for validating the different prediction tools was obtained from the training set of the TBpred tool [], which is an algorithm specifically designed for predicting subcellular localization of mycobacterial proteins. This tool's data set contains 852 proteins (extracted from SWISS-PROT), w […]

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TBpred institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India

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