TBtools protocols

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TBtools computational protocol

TBtools specifications

Information


Unique identifier OMICS_28210
Name TBtools
Alternative name Toolbox for Biologists
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 0.58
Stability Stable
Requirements
JRE
Maintained Yes

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Maintainers


  • person_outline Yehua He <>
  • person_outline Rui Xia <>
  • person_outline Chengjie Chen <>

Publication for Toolbox for Biologists

TBtools IN pipelines

 (3)
2018
PMCID: 5924554
PMID: 29659525
DOI: 10.3390/genes9040212

[…] in the multi-group comparison, it was considered to be a significantly different expression level. the degs were further annotated with go functional and kegg pathway analyses using the software tbtools [39]. p-values generated from the enrichment analyses were subjected to multiple hypotheses testing by perlscript [40], and a p-value of <0.05 considering statistically significant. […]

2016
PMCID: 5033252
PMID: 27656892
DOI: 10.1371/journal.pone.0163315

[…] were similar to the ones obtained from the rnaseq results (s4 fig), indicating that the method used to determine differentially expressed genes in this study was valid., the home made application ‘tbtools’ (http://cj-chen.github.io/tbtools/) was used to identify go terms that were remarkably enriched in cors. enriched go terms in up-regulated and down-regulated cors were identified separately […]

2016
PMCID: 5033252
PMID: 27656892
DOI: 10.1371/journal.pone.0163315

[…] from the rnaseq results (s4 fig), indicating that the method used to determine differentially expressed genes in this study was valid., the home made application ‘tbtools’ (http://cj-chen.github.io/tbtools/) was used to identify go terms that were remarkably enriched in cors. enriched go terms in up-regulated and down-regulated cors were identified separately using the hyper-geometric test., […]

TBtools institution(s)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Ministry of Agriculture, Guangzhou, China; Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in South China, Ministry of Agriculture, Guangzhou, China; College of Horticulture, South China Agricultural University, Guangzhou, China; Oilseed Crops Institute, Hunan Agricultural University, Changsha, China

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