TCGA_RNASeq_Clinical statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

TCGA_RNASeq_Clinical specifications

Information


Unique identifier OMICS_09468
Name TCGA_RNASeq_Clinical
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements
Rsubread, limma, edgeR, tools
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


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Documentation


Maintainer


  • person_outline Stephen R. Piccolo <>

Publication for TCGA_RNASeq_Clinical

TCGA_RNASeq_Clinical in publication

PMCID: 5406893
PMID: 28446242
DOI: 10.1186/s13073-017-0429-x

[…] gse59765), tcga breast cancer data (gse62944), and icbp breast cancer rna-seq dataset (gse48213), were processed and normalized using a pipeline that can be found at https://github.com/srp33/tcga_rnaseq_clinical [, ]., adaptive signature selection and integration (assign; version 1.9.1), a semi-supervised pathway profiling toolkit, was used to generate gene expression signatures. […]


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TCGA_RNASeq_Clinical institution(s)
Department of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA; Department of Pharmacology and Toxicology, University of Utah, Salt Lake City, UT, USA; Department of Oncological Sciences, University of Utah, Salt Lake City, UT, USA; Division of Computational Biomedicine, Boston University School of Medicine, Boston, MA, USA; School of Medicine, University of Utah, Salt Lake City, UT, USA; Department of Human Genetics, University of Utah, Salt Lake City, UT, USA; Department of Biology, Brigham Young University, Provo, UT, USA

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