TCGA2BED specifications


Unique identifier OMICS_14658
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data The Cancer Genome Atlas (TCGA) data.
Output data The extracted information for TCGA data, the converted TCGA data.
Output format BED, CSV, GTF, JSON, XML
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 1.0
Stability Stable
Requirements JRE
Maintained Yes



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  • person_outline Emanuel Weitschek <>

Publication for TCGA2BED

TCGA2BED institution(s)
Institute of Systems Analysis and Computer Science “A. Ruberti”, National Research Council, Rome, Italy; Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milan, Italy; Department of Engineering, Roma Tre University, Rome, Italy; Department of Engineering, Uninettuno International University, Rome, Italy
TCGA2BED funding source(s)
This work was supported by the ERC Advanced Grant “Data-Driven Genomic Computing”, by the Italian PRIN Grant “GenData 2020” and partly supported by The Epigenomics Flagship Project (EPIGEN) and by SysBioNet, Italian Roadmap Research Infrastructures 2012.

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