TCGA2BED specifications

Unique identifier:
OMICS_14658
Interface:
Graphical user interface
Input data:
The Cancer Genome Atlas (TCGA) data.
Output format:
BED, CSV, GTF, JSON, XML
Programming languages:
Java
Computer skills:
Medium
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Output data:
The extracted information for TCGA data, the converted TCGA data.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.0
Requirements:
JRE

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TCGA2BED distribution

download

TCGA2BED support

Documentation

Maintainer

  • Emanuel Weitschek <>

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Publications

Institution(s)

Institute of Systems Analysis and Computer Science “A. Ruberti”, National Research Council, Rome, Italy; Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milan, Italy; Department of Engineering, Roma Tre University, Rome, Italy; Department of Engineering, Uninettuno International University, Rome, Italy

Funding source(s)

This work was supported by the ERC Advanced Grant “Data-Driven Genomic Computing”, by the Italian PRIN Grant “GenData 2020” and partly supported by The Epigenomics Flagship Project (EPIGEN) and by SysBioNet, Italian Roadmap Research Infrastructures 2012.

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