TCGA2BED specifications

Information


Unique identifier OMICS_14658
Name TCGA2BED
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data The Cancer Genome Atlas (TCGA) data.
Output data The extracted information for TCGA data, the converted TCGA data.
Output format BED, CSV, GTF, JSON, XML
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 1.0
Stability Stable
Requirements
JRE
Maintained Yes

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Documentation


Maintainer


  • person_outline Emanuel Weitschek <>

Publication for TCGA2BED

TCGA2BED institution(s)
Institute of Systems Analysis and Computer Science “A. Ruberti”, National Research Council, Rome, Italy; Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milan, Italy; Department of Engineering, Roma Tre University, Rome, Italy; Department of Engineering, Uninettuno International University, Rome, Italy
TCGA2BED funding source(s)
Supported by the ERC Advanced Grant “Data-Driven Genomic Computing” and by the Italian PRIN Grant “GenData 2020”; by The Epigenomics Flagship Project (EPIGEN), by SysBioNet, Italian Roadmap Research Infrastructures 2012.

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