TCGAbiolinks pipeline

TCGAbiolinks specifications

Information


Unique identifier OMICS_10961
Name TCGAbiolinks
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.4.6
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Antonio Colaprico <>
  • person_outline Luigi Cerulo <>
  • person_outline Houtan Noushmehr <>
  • person_outline Tiago Chedraoui Silva <>

Additional information


GUI version: https://github.com/BioinformaticsFMRP/TCGAbiolinksGUI Demo: https://tcgabiolinksgui.shinyapps.io/demo/

Publications for TCGAbiolinks

TCGAbiolinks IN pipeline

2017
PMCID: 5364979
PMID: 28260099
DOI: 10.3892/mmr.2017.6194

[…] on september 25, 2015, including 533 kirc samples. clinical information, including status, follow-up time and time of death, was also collected., raw data were normalized and filtered using the tcgabiolinks package in r (version 3.2.2, http://www.r-project.org/). genes with an average expression level <0.25 in all samples were excluded from the subsequent analyses. feature genes […]

TCGAbiolinks institution(s)
Department of Science and Technology, University of Sannio, Benevento, Italy; BioGeM, Institute of Genetic Research “Gaetano Salvatore”, Ariano Irpino (AV) Italy; Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Napoli, Italy
TCGAbiolinks funding source(s)
Supported by a research project funded by MiUR (Ministero dell’Università e della Ricerca) under grant FIRB2012-RBFR12QW4I.

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