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TCMGeneDIT specifications


Unique identifier OMICS_09546
Restrictions to use None
Maintained Yes

Publication for TCMGeneDIT

TCMGeneDIT citations


OWL Reasoning Framework over Big Biological Knowledge Network

Biomed Res Int
PMCID: 4022201
PMID: 24877076
DOI: 10.1155/2014/272915

[…] cine and Chinese medicine developed by us. It includes most of the typical biological ontologies across WM and TCM including Gene ontology [], Disease ontology [], Diseasome ontology [], DrugBank [], TCMGeneDit [], TCMLS [], UniProt [], and NCBI Gene []. Every oval in the linked knowledge graph is marked up by a number which represents the triple number of the data set. The dashed ovals in indica […]


BioTCM SE: A Semantic Search Engine for the Information Retrieval of Modern Biology and Traditional Chinese Medicine

PMCID: 3989774
PMID: 24772189
DOI: 10.1155/2014/957231

[…] logy definitions (most TCM data), we manually add key concepts and attributes with the help of related domain experts into biotcm:data. For example, we refer to three TCM-related data sources: BioTCM:TCMGeneDIT [], BioTCM:TCMLS [], and BioTCM:FivePhases []. Then TCM experts help us extract important TCM concepts and properties from the three data sets as a part of biotcm:data. […]


Semantic Web for data harmonization in Chinese medicine

PMCID: 2823599
PMID: 20205772
DOI: 10.1186/1749-8546-5-2

[…] RDF/OWL format, new warehouses and federated query systems have been built from scratch using Semantic Web technologies to allow direct access by programs. As part of the HCLS IG effort, a subset of TCMGeneDIT was converted into RDF format and loaded into an RDF triplestore []. In addition, the BioRDF task force of the HCLS IG has undertaken the effort of implementing query federation using the S […]


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TCMGeneDIT institution(s)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan; Institute of Biomedical informatics & Center for Systems and Synthetic Biology, National Yang-Ming University, Taipei, Taiwan; Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan; Department of Life Science, National Taiwan University, Taipei, Taiwan; Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan; Center for Systems Biology and Bioinformatics, National Taiwan University, Taipei, Taiwan

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