tCONCOORD pipeline

tCONCOORD specifications

Information


Unique identifier OMICS_09804
Name tCONCOORD
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Daniel Seeliger <>

Publications for tCONCOORD

tCONCOORD IN pipelines

 (2)
2015
PMCID: 4519324
PMID: 26222439
DOI: 10.1371/journal.pone.0134506

[…] parameters of holmberg et al. [32] for the cofactor, and generalized-born implicit solvent model with parameters of hawkins et al. [33]. the minimized structures were used as the input for the tconcoord algorithm [34], which generates a set of independent conformations based on geometrical constraints [35]. it was designed to accurately capture the protein flexibility and the validity […]

2015
PMCID: 4519324
PMID: 26222439
DOI: 10.1371/journal.pone.0134506

[…] designed to accurately capture the protein flexibility and the validity of the resulting conformational ensembles has been proven on a variety of proteins, including also akr1b1 [34]. by means of tconcoord, we generated and analyzed the ensembles of 2500 conformations, which were subsequently used to calculate root mean square fluctuations (rmsf) of backbone atoms., the energy minimized […]

tCONCOORD institution(s)
Computational Biomolecular Dynamics Group, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany

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