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tcR

A platform designed for TCR repertoire data analysis in R after preprocessing data with MiTCR or other CDR3 extraction and gene alignment software tools. With the power and flexibility of R language and procedures supported by tcR users can perform advanced statistical analysis of TCR repertoires.

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tcR versioning

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tcR classification

  • Animals
  • Fungi
  • Plants
  • Protists

tcR specifications

Software type:
Package/Module
Restrictions to use:
None
Output data:
Analysis results
Operating system:
Unix/Linux, Mac OS, Windows
License:
Apache License version 2.0
Version:
1.3
Requirements:
Data.table, dplyr, ggplot, grid, gridExtra, gtable, igraph, Rcpp, reshape, roxygen, stringdist, utils
Interface:
Command line interface
Input data:
Pre-processed RepSeq data
Biological technology:
Illumina, Roche
Programming languages:
C++, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

tcR support

Maintainer

  • Vadim Nazarov <>

Credits

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Publications

Institution(s)

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia

Link to literature

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