TCRklass statistics

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Citations per year

Citations chart
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Popular tool citations

chevron_left V(D)J assignment CDR3 sequence identification chevron_right
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Tool usage distribution map

Tool usage distribution map
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Associated diseases

Associated diseases

TCRklass specifications

Information


Unique identifier OMICS_06495
Name TCRklass
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for TCRklass

TCRklass in publications

 (2)
PMCID: 5504616
PMID: 28693542
DOI: 10.1186/s12896-017-0379-9

[…] the past years different tools and strategies have been developed for immune repertoire analysis, of which some have been summarized in previous reviews [, , –]. other methods, such as imseq [], tcrklass, imonitor [], lymanalyzer [] and rtrc [], have however emerged since. a popular tool is mixcr (previously mitcr), developed by bolotin et al. [], which allows for a highly customizable […]

PMCID: 4994872
PMID: 27478940
DOI: 10.1038/ni.3522

[…] and sequenced on a miseq using a single read 250bp run (illumina). sequence data sets were parsed by barcode using the program fastq-multx and clonotypes for each population were tabulated using tcrklass., the similarity of tcrs utilized within each population was quantified using the morisita-horn similarity index, 0 (minimal similarity) and 1 (maximal similarity). the morisita-horn (m-h) […]


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TCRklass institution(s)
Chinese Academy of Sciences Key Laboratory of Pathogenic Microbiology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China

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