tcsBU statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

tcsBU specifications

Information


Unique identifier OMICS_10439
Name tcsBU
Interface Web user interface
Restrictions to use None
Programming languages Javascript
License MIT License
Computer skills Basic
Stability Stable
Maintained Yes

Download


github.png

Maintainer


  • person_outline António Múrias dos Santos

Publication for tcsBU

tcsBU citations

 (3)
call_split

Morphological and molecular analyses of Anodontinae species (Bivalvia, Unionidae) of Lake Baikal and Transbaikalia

2018
PLoS One
PMCID: 5890983
PMID: 29630628
DOI: 10.1371/journal.pone.0194944
call_split See protocol

[…] ataset for Anodonta anatina from Froufe et al. [], with a total of 125 COI sequences. A haplotype network was constructed using TCS 1.21 [] with a threshold of 95% and the output file was run through tcsBU []. Sequence divergences within the European haplogroup (uncorrected p-distance) were calculated using MEGA 7.0 []. Two distinct tools were used for this COI dataset to detect the number of Mole […]

call_split

Along for the ride or missing it altogether: exploring the host specificity and diversity of haemogregarines in the Canary Islands

2018
PMCID: 5859493
PMID: 29554983
DOI: 10.1186/s13071-018-2760-5
call_split See protocol

[…] Additionally, phylogenetic networks for the clades containing Canarian haemogregarines were constructed using the statistical parsimony approach implemented in TCS [] and displayed graphically using tcsBU [].A hierarchical analysis of molecular variance (AMOVA) was performed to test the hypotheses regarding genetic structure among haemogregarine haplotypes, using islands and host species as varia […]

call_split

Digging up the roots of an insular hotspot of genetic diversity: decoupled mito nuclear histories in the evolution of the Corsican Sardinian endemic lizard Podarcis tiliguerta

2017
BMC Evol Biol
PMCID: 5335832
PMID: 28253846
DOI: 10.1186/s12862-017-0899-x
call_split See protocol

[…] s of divergence [] as we observed in the acm4 and mc1r datasets. Networks were constructed under the 95% probability criterion for a parsimonious connection and represented graphically using the tool tcsBU []. Additionally, since mc1r sequences are available in GenBank for other Podarcis species, we combined them with sequence data from the present study to examine the phylogenetic relationships o […]

Citations

Looking to check out a full list of citations?

tcsBU institution(s)
Faculdade de Ciências da Universidade do Porto, Porto, Portugal; CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, Portugal

tcsBU reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review tcsBU