TDCA specifications

Information


Unique identifier OMICS_24406
Name TDCA
Alternative name Time Dependent ChIP-Sequencing Analysis
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Sequencing data and genes coordinates.
Input format BAM,BED
Output data Some graphical and raw data.
Operating system Unix/Linux, Windows
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.0
Stability Stable
Requirements R, R Package plot 3D, R Package drc, R Package rgl, R Package ggplot2, R Package scales, R Package grid, R Package reshape, R Package scatterplot3d, Bedtools, Samtools
Maintained Yes

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Documentation


Maintainers


  • person_outline Mike Myschyshyn <>
  • person_outline David Vocadlo <>

Publication for Time Dependent ChIP-Sequencing Analysis

TDCA institution(s)
Department of Molecular Biology and Biochemistry, Burnaby, BC, Canada; Chemistry, Simon Fraser University, Burnaby, BC, Canada
TDCA funding source(s)
Supported by a Discovery Grant the Natural Sciences and Engineering Research (NSERC, RGPIN/2015–05426) and the Canadian Institutes of Health Research (CIHR, PJT-148732), the Canada Research Chairs program for a Tier I Canada Research Chair in Chemical Glycobiology, and a PGS-M graduate fellowship.

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