Teaser specifications

Information


Unique identifier OMICS_09840
Name Teaser
Software type Application/Script
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Download


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Versioning


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Maintainer


  • person_outline Fritz J. Sedlazeck

Information


Unique identifier OMICS_09840
Name Teaser
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Fritz J. Sedlazeck

Publication for Teaser

Teaser citation

library_books

Testing of Alignment Parameters for Ancient Samples: Evaluating and Optimizing Mapping Parameters for Ancient Samples Using the TAPAS Tool

2018
Genes
PMCID: 5867878
PMID: 29533977
DOI: 10.3390/genes9030157

[…] mplicate the optimization of mapping parameters and further support the benefit of the TAPAS tool for this task.Although tools designed for datasets derived from high quality DNA are available (e.g., Teaser [], Rabema [], GCAT []), the characteristics of aDNA present specific challenges that are not common for modern genomic data. Issues such as spurious mapping of contaminants can potentially hav […]

Teaser institution(s)
Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, Austria; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
Teaser funding source(s)
Supported by National Science Foundation awards (DBI-1350041 and IOS-1237880), National Institutes of Health award (R01-HG006677), IPlant (DBI-1265383), RNA-DK Biology (W1207-B09), the University of Vienna and the Medical University Vienna.

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