tEFMA specifications

Information


Unique identifier OMICS_07593
Name tEFMA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Publication for tEFMA

tEFMA citations

 (2)
library_books

Quantification of Microbial Phenotypes

2016
PMCID: 5192451
PMID: 27941694
DOI: 10.3390/metabo6040045

[…] ach. The first attempt of thermodynamic analysis of EFMs was realized to an E. coli metabolic network []. Later, a full NET analysis of EFMs was performed for a yeast model []. The latest approach is tEFMA, a software that, while enumerates the EFMs is checking for thermodynamics feasibility in order to reduce the time in the EFMs generation [,]. […]

library_books

Metabolomics integrated elementary flux mode analysis in large metabolic networks

2015
Sci Rep
PMCID: 4354105
PMID: 25754258
DOI: 10.1038/srep08930

[…] We developed and applied tEFMA to study the metabolic capabilities of E. coli. tEFMA integrates experimentally determined metabolomes into an ordinary EFMA to avoid the calculation of thermodynamically infeasible EFMs. Recent […]

tEFMA institution(s)
Austrian Centre of Industrial Biotechnology, Vienna, Austria; Department of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria

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