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Telescoper

Extends long paths through a series of read-overlap graphs and evaluates them based. Telescoper uses short- and long-insert libraries in an integrated way throughout the assembly process. It produces more continuous assemblies than the other algorithms considered. The tool can be used as a finishing algorithm to extend contigs into repetitive regions and produce better assemblies for telomeres.

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Telescoper forum

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Telescoper classification

Telescoper specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

Telescoper distribution

versioning

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No versioning.

Telescoper support

Maintainer

  • Yun S. Song <>

Credits

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Publications

Institution(s)

Department of EECS, University of California, Berkeley, CA, USA; Department of Statistics, University of California, Berkeley, CA, USA

Funding source(s)

Supported by NSF Graduate Research Fellowships, an NDSEG Graduate Fellowship, and an NSF CAREER Grant DBI-0846015.

Link to literature

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