TelomereHunter specifications

Information


Unique identifier OMICS_12433
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data TelomereHunter takes WGS BAM files of single samples or matched tumor and control pairs as input.
Input format BAM
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.4
Stability Stable
Requirements PySam, PyPDF2, samtoolsn, R, ggplot2, reshape2, gridExtra, RColorBrewer
Source code URL https://pypi.python.org/pypi/telomerehunter/
Maintained Yes

Versioning


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Maintainer


  • person_outline Li Sieverling <>

TelomereHunter article

TelomereHunter institution(s)
Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Research Group Genome Organization & Function, German Cancer Research Center (DKFZ) and BioQuant Center, Heidelberg, Germany; Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany; German Cancer Consortium (DKTK), Heidelberg, Germany; Department of Pediatric Oncology, Hematology and Immunology, University Hospital Heidelberg, Heidelberg, Germany
TelomereHunter funding source(s)
The Project CancerTelSys [grant number 01ZX1302] in the e:Med program of the German Federal Ministry of Education and Research (BMBF); the German Federal Ministry of Education and Science in the program for medical genome research [grant number: 01KU1001A, -B, -C, and -D]; the intramural funding program of the German Cancer Research Center

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