TelomereHunter specifications

Unique identifier:
OMICS_12433
Interface:
Command line interface
Input data:
TelomereHunter takes WGS BAM files of single samples or matched tumor and control pairs as input.
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
1.0.4
Requirements:
PySam, PyPDF2, samtoolsn, R, ggplot2, reshape2, gridExtra, RColorBrewer
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
BAM
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://pypi.python.org/pypi/telomerehunter/

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TelomereHunter support

Maintainer

  • Li Sieverling <>

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Publications

Institution(s)

Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Research Group Genome Organization & Function, German Cancer Research Center (DKFZ) and BioQuant Center, Heidelberg, Germany; Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany; German Cancer Consortium (DKTK), Heidelberg, Germany; Department of Pediatric Oncology, Hematology and Immunology, University Hospital Heidelberg, Heidelberg, Germany

Funding source(s)

The Project CancerTelSys [grant number 01ZX1302] in the e:Med program of the German Federal Ministry of Education and Research (BMBF); the German Federal Ministry of Education and Science in the program for medical genome research [grant number: 01KU1001A, -B, -C, and -D]; the intramural funding program of the German Cancer Research Center

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