TelomereHunter statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool TelomereHunter
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Telomere content estimation chevron_right
Want to access the full stats & trends on this tool?

Protocols

TelomereHunter specifications

Information


Unique identifier OMICS_12433
Name TelomereHunter
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data TelomereHunter takes WGS BAM files of single samples or matched tumor and control pairs as input.
Input format BAM
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.4
Stability Stable
Requirements
PySam, PyPDF2, samtoolsn, R, ggplot2, reshape2, gridExtra, RColorBrewer
Source code URL https://pypi.org/project/telomerehunter/
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Li Sieverling

Publication for TelomereHunter

TelomereHunter citation

call_split

The age of heterozygous telomerase mutant parents influences the adult phenotype of their offspring irrespective of genotype in zebrafish

2018
Wellcome Open Res
PMCID: 5840683
PMID: 29568807
DOI: 10.21956/wellcomeopenres.13568.r26482
call_split See protocol

[…] options: -proc 4 -nchr 25 -lgenome 1371719383 -pattern TTAGGG). FASTQ files were also aligned to the Zv9 reference genome using BWA (v0.7.15, options: mem -t 14 -p -Y -K 100000000) and analysed using TelomereHunter (v1.0.4, options: -d –r TTAGGG -nf). […]


Want to access the full list of citations?
TelomereHunter institution(s)
Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Research Group Genome Organization & Function, German Cancer Research Center (DKFZ) and BioQuant Center, Heidelberg, Germany; Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany; German Cancer Consortium (DKTK), Heidelberg, Germany; Department of Pediatric Oncology, Hematology and Immunology, University Hospital Heidelberg, Heidelberg, Germany
TelomereHunter funding source(s)
The Project CancerTelSys [grant number 01ZX1302] in the e:Med program of the German Federal Ministry of Education and Research (BMBF); the German Federal Ministry of Education and Science in the program for medical genome research [grant number: 01KU1001A, -B, -C, and -D]; the intramural funding program of the German Cancer Research Center

TelomereHunter reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TelomereHunter