TelomereHunter specifications

Information


Unique identifier OMICS_12433
Name TelomereHunter
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data TelomereHunter takes WGS BAM files of single samples or matched tumor and control pairs as input.
Input format BAM
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.4
Stability Stable
Requirements
PySam, PyPDF2, samtoolsn, R, ggplot2, reshape2, gridExtra, RColorBrewer
Source code URL https://pypi.org/project/telomerehunter/
Maintained Yes

Versioning


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Maintainer


  • person_outline Li Sieverling <>

Publication for TelomereHunter

TelomereHunter in publication

PMCID: 5840683
PMID: 29568807
DOI: 10.21956/wellcomeopenres.13568.r26482

[…] -proc 4 -nchr 25 -lgenome 1371719383 -pattern ttaggg). fastq files were also aligned to the zv9 reference genome using bwa (v0.7.15, options: mem -t 14 -p -y -k 100000000) and analysed using telomerehunter (v1.0.4, options: -d –r ttaggg -nf)., fish homozygous for the point mutation tert hu3430 age prematurely, evidenced by spinal curvature, tissue degeneration and premature infertility […]


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TelomereHunter institution(s)
Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Research Group Genome Organization & Function, German Cancer Research Center (DKFZ) and BioQuant Center, Heidelberg, Germany; Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany; German Cancer Consortium (DKTK), Heidelberg, Germany; Department of Pediatric Oncology, Hematology and Immunology, University Hospital Heidelberg, Heidelberg, Germany
TelomereHunter funding source(s)
The Project CancerTelSys [grant number 01ZX1302] in the e:Med program of the German Federal Ministry of Education and Research (BMBF); the German Federal Ministry of Education and Science in the program for medical genome research [grant number: 01KU1001A, -B, -C, and -D]; the intramural funding program of the German Cancer Research Center

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