TelSeq pipeline

TelSeq specifications

Information


Unique identifier OMICS_03276
Name TelSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Whole-genome sequencing data
Input format BAM
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements bamtools, GCC
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Zhihao Ding <>

Publication for TelSeq

TelSeq citation

2016
PMCID: 5012401

[…] lengths were estimated using telseq (version 0.0.1) (ding et al. 2014) on bam files derived from wild isolates or million mutation project (mmp) strain sequencing. to estimate telomere lengths, telseq determines the reads that contain greater than seven telomeric hexamer repeats (ttaggc for c. elegans). compared to most hexamers, telomeric hexamers can be found tandemly repeated within […]

TelSeq institution(s)
Genome Informatics, Wellcome Trust Sanger Institute, Hinxton, UK; Department of Twin Research and Genetic Epidemiology, King's College London, London, UK; The Center for Human Development and Aging, New Jersey Medical School, Rutgers University, Newark, NJ, USA
TelSeq funding source(s)
Wellcome Trust [WT091310]; Wellcome Trust [WT098051]; European Community's Seventh Framework Programme [FP7/2007–13]; National Institutes of Health [R01HD071180, R01AG030678]

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