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TEMSP specifications

Information


Unique identifier OMICS_07661
Name TEMSP
Alternative name 3D TEmplate-based Metal Site Prediction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

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Publication for 3D TEmplate-based Metal Site Prediction

TEMSP citations

 (3)
library_books

Computational approaches for de novo design and redesign of metal binding sites on proteins

2017
Biosci Rep
PMCID: 5482196
PMID: 28167677
DOI: 10.1042/BSR20160179

[…] r [] utilizes two libraries of Hidden Markov Model profiles representative of Pfam domains and structural motifs that bind Fe/S clusters. Some prediction software such as FINDSITE-metal [], mFASD [], TEMSP [], FEATURE metal scanning [–] utilize structural information for prediction of the metal ion-binding sites. A few of them such as MetSite [], 3DLigandSite [], Fragment Transformation Method [] […]

library_books

Characterization of Peptidyl Prolyl Cis Trans Isomerase and Calmodulin Binding Activity of a Cytosolic Arabidopsis thaliana Cyclophilin AtCyp19 3

2015
PLoS One
PMCID: 4552658
PMID: 26317213
DOI: 10.1371/journal.pone.0136692

[…] of these Cys residues is invariably conserved in divergent loop cyclophilins and has been proposed as a metal binding site in Caenorhabditis elegans cyclophilin 3 (CyP3) []. In silico analysis using TEMSP server suggests the presence of an additional metal binding site consisting of Cys-122, Cys-126 and His-99 also in TaCypA-1 (). Although, no evidence at the structural level has experimentally d […]

library_books

An Integrative Computational Framework Based on a Two Step Random Forest Algorithm Improves Prediction of Zinc Binding Sites in Proteins

2012
PLoS One
PMCID: 3499040
PMID: 23166753
DOI: 10.1371/journal.pone.0049716

[…] diverse residue properties, including spatial clustering of residue type, median-relative solvent accessible surface area and evolutionary conservation . More recently, a new structure-based approach TEMSP was reported, which uses only the main chain structure of the target protein for the prediction of zinc-binding proteins .Although there has been some progress for developing methods for predict […]

Citations

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TEMSP institution(s)
Key Laboratory of Structural Biology, Chinese Academy of Sciences, Hefei, Anhui, China

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