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|Alternative name||3D TEmplate-based Metal Site Prediction|
|Interface||Command line interface|
|Restrictions to use||None|
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Publication for 3D TEmplate-based Metal Site Prediction
Computational approaches for de novo design and redesign of metal binding sites on proteins
[…] r  utilizes two libraries of Hidden Markov Model profiles representative of Pfam domains and structural motifs that bind Fe/S clusters. Some prediction software such as FINDSITE-metal , mFASD , TEMSP , FEATURE metal scanning [–] utilize structural information for prediction of the metal ion-binding sites. A few of them such as MetSite , 3DLigandSite , Fragment Transformation Method  […]
Characterization of Peptidyl Prolyl Cis Trans Isomerase and Calmodulin Binding Activity of a Cytosolic Arabidopsis thaliana Cyclophilin AtCyp19 3
[…] of these Cys residues is invariably conserved in divergent loop cyclophilins and has been proposed as a metal binding site in Caenorhabditis elegans cyclophilin 3 (CyP3) . In silico analysis using TEMSP server suggests the presence of an additional metal binding site consisting of Cys-122, Cys-126 and His-99 also in TaCypA-1 (). Although, no evidence at the structural level has experimentally d […]
An Integrative Computational Framework Based on a Two Step Random Forest Algorithm Improves Prediction of Zinc Binding Sites in Proteins
[…] diverse residue properties, including spatial clustering of residue type, median-relative solvent accessible surface area and evolutionary conservation . More recently, a new structure-based approach TEMSP was reported, which uses only the main chain structure of the target protein for the prediction of zinc-binding proteins .Although there has been some progress for developing methods for predict […]
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