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Teolenn specifications

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Unique identifier OMICS_24163
Name Teolenn
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License CeCILL version 2.1, GNU General Public License version 3.0
Computer skills Advanced
Version 2.0.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Stéphane Le Crom <>

Publication for Teolenn

Teolenn citations

 (2)
library_books

Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper producer Trichoderma reesei strain

2014
PMCID: 4279801
PMID: 25550711
DOI: 10.1186/s13068-014-0173-z

[…] using an indirect labelling procedure and dye-switch on the two biological replicates. hybridization and scanner procedures for the t. reesei dna chip manufactured by agilent and designed using the teolenn software have been described previously [,].the data were normalized without background subtraction by the global lowess method performed with the goulphar software []. the background […]

library_books

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

2013
PMCID: 3599271
PMID: 23432824
DOI: 10.1186/1471-2164-14-121

[…] t. virens [http://genome.jgi-psf.org/trive1/trive1.home.html] and t. reesei [http://genome.jgi-psf.org/trire2/trire2.home.html]. the design was done with teolenn [] using a maximum prefix length match set to 30 for the uniqueness calculation made by genome tools. complexity is evaluated using the masked genome by counting the number of masked bases […]


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Teolenn institution(s)
Institut de Biologie de l’Ecole normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, Paris; IFP, Département Biotechnologie, Rueil-Malmaison, France
Teolenn funding source(s)
Supported by Réseau National Génopôle (RNG), Infrastrutures en Biologie Santé et Agronomie (IBISA) and by Foundation Tuck ‘Enerbio’ fund doctorate fellowship.

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