TeraStitcher statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool TeraStitcher

Tool usage distribution map

This map represents all the scientific publications referring to TeraStitcher per scientific context
info info

Associated diseases


Popular tool citations

chevron_left 2D image reconstruction 3D image reconstruction 3D image reconstruction 2D image reconstruction chevron_right
Want to access the full stats & trends on this tool?

TeraStitcher specifications


Unique identifier OMICS_27778
Name TeraStitcher
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.10.12
Stability Stable
Maintained Yes




No version available



  • person_outline Alessandro Bria
  • person_outline Giulio Iannello
  • person_outline Roberto Valenti

Additional information


Publication for TeraStitcher

TeraStitcher citations


QandA: How can advances in tissue clearing and optogenetics contribute to our understanding of normal and diseased biology?

BMC Biol
PMCID: 5613628
PMID: 28946882
DOI: 10.1186/s12915-017-0421-3

[…] es seamlessly, although they only provide simple functions for processing 3-D images. None of the above software can stitch a large volume that is composed of multiple tiles, and the open-source tool TeraStitcher [] is a good solution for this purpose. For satisfying stitching results, at least 10% overlap between tiles is required.Cell morphology is of particular interest in neuroscience owing to […]


Micron scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy

PMCID: 3939053
PMID: 24145191
DOI: 10.3791/50696

[…] complete the virtual acquired volume to a parallelepiped (c).Figure 5. Volume stitching. The collected image stacks partially overlap between each other (a), allowing their precise alignment with the TeraStitcher plugin (b). The plugin then merges the aligned stacks in either a single-stacked (c) or multi-stacked (d) multi-resolution representation.Figure 6. Whole cerebellum of a P10 L7-GFP mouse, […]


Light microscopy applications in systems biology: opportunities and challenges

PMCID: 3627909
PMID: 23578051
DOI: 10.1186/1478-811X-11-24

[…] gorithms for stitching, registration, and mapping to anatomical atlases. In addition to the extensible Vaa3D [] and Fiji software packages, which are both established in this field, new tools such as TeraStitcher that can handle TiB-scale datasets have now emerged []. While the imaging of such high-level structures is typically conducted in a rather low throughput, partially automated workflows re […]

Want to access the full list of citations?
TeraStitcher institution(s)
Center of Integrated Research, University Campus Bio-Medico di Roma, Roma, Italy; Department of Electrical and Information Engineering, University of Cassino and L.M., Cassino, Italy
TeraStitcher funding source(s)
Supported by the International Center of Computational Neurophotonics.

TeraStitcher reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TeraStitcher