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Protocols

TerMine specifications

Information


Unique identifier OMICS_07937
Name TerMine
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline TerMine Team

TerMine citations

 (9)
library_books

Musculoskeletal care pathways for adults with hip and knee pain at the interface between primary and secondary care: protocol for a systematic review

2016
Syst Rev
PMCID: 5054607
PMID: 27717394
DOI: 10.1186/s13643-016-0301-x

[…] alth Literature (CINAHL) Embase, PEDro, PubMed, Web of Science, Cochrane Central Register of Controlled Trials and Health Management Information Consortium (HMIC).Using a range of resources including TerMine [] to identify keywords and Yale MeSH Analyzer [] for indexed terms, the search terms have been developed in Ovid MEDLINE (Table ) and will be adapted to the other databases. The Ovid MEDLINE […]

library_books

FlexiTerm: a flexible term recognition method

2013
J Biomed Semantics
PMCID: 3853334
PMID: 24112363
DOI: 10.1186/2041-1480-4-27

[…] on was performed using the gold standard and the evaluation measures described previously. The evaluation results provided for our method were compared to those achieved by a baseline method. We used TerMine [], a freely available service from the academic domain based on C-value [], as the baseline method. The values of all evaluation measures achieved on top k (k = 10, 20, …, 500) proposed terms […]

call_split

Identifying medical terms in patient authored text: a crowdsourcing based approach

2013
PMCID: 3822103
PMID: 23645553
DOI: 10.1136/amiajnl-2012-001110
call_split See protocol

[…] pproximately $600 and $150, respectively. We train two models—a dictionary and a CRF—on the MedHelp dataset, and evaluate their performance via fivefold cross validation; we compare MetaMap, OBA, and TerMINE's output directly. Finally, we compare the performance of all five models against the CureTogether gold standard. […]

library_books

Search Filters for Finding Prognostic and Diagnostic Prediction Studies in Medline to Enhance Systematic Reviews

2012
PLoS One
PMCID: 3290602
PMID: 22393453
DOI: 10.1371/journal.pone.0032844

[…] s (merging related terms) and used for the generation of frequency tables. These frequency lists are then reported to the user in interactive tables. Next to Pubreminer, we used the web-based service TerMine . TerMine was used to compare nested multi-word terms within context between both sets of our database (http://www.nactem.ac.uk/software/termine/).Both methods were used to identify an additio […]

library_books

Named Entity Recognition for Bacterial Type IV Secretion Systems

2011
PLoS One
PMCID: 3066171
PMID: 21468321
DOI: 10.1371/journal.pone.0014780

[…] as part of the full text of the articles. Therefore, we developed new training and evaluation corpus materials for these concepts of interest, based on annotation of full papers.It was necessary to determine the types of entities that would be most useful for distinguishing T4SS-related documents. To facilitate this process, we used the term extraction service, TerMine (http://www.nactem.ac.uk/sof […]

library_books

Mining semantic networks of bioinformatics e resources from the literature

2011
J Biomed Semantics
PMCID: 3105496
PMID: 21388573
DOI: 10.1186/2041-1480-2-S1-S4

[…] e, nucleic acid sequence); and tasks (generic tasks a service operation can perform e.g. retrieving, displaying, aligning). The second source includes automatically extracted terms (recognised by the TerMine service []) and frequent noun phrases obtained from existing descriptions of bioinformatics Web resources available from BioCatalogue. […]

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