TEtools specifications


Unique identifier OMICS_14409
Name TEtools
Alternative name transposable elements tools
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Rosette file, NGS sequence or alignement, TE copy sequences
Input format FASTQ, SAM
Output data Read counts.
Output format TXT
Operating system Unix/Linux, Mac OS
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Galaxy
Maintained Yes



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  • person_outline Cristina Vieira <>

Publication for transposable elements tools

TEtools institution(s)
Laboratoire de Biometrie et Biologie Evolutive, UMR CNRS 5558, Université Lyon 1, Université de Lyon, Villeurbanne, France
TEtools funding source(s)
This work was supported by Agence Nationale de la Recherche [Exhyb ANR-14-CE19- 0016-01]; Fondation pour la Recherche Medicale [DEP20131128536]; CNRS; Institut Universitaire de France.

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