Biomedical text mining analysis software tools and databases

Text mining applications

The scientific literature is the key distribution channel for novel findings and hypotheses from research. As the number of publications continuously grows, retrieving relevant scientific information and identifying connections between pieces of scientific knowledge becomes a…

Biomedical text mining analysis software tools and databases

Most Recent Tools

BioInfer
Desktop

BioInfer Bio Information Extraction Resource

Provides the key types of annotation for a single set of sentences, expressing…

Provides the key types of annotation for a single set of sentences, expressing complex relationships between both physical and abstract entities. BioInfer is a public resource providing an annotated…

GENE-E
Desktop

GENE-E

Supports visual data exploration. GENE-E is a matrix visualization and analysis…

Supports visual data exploration. GENE-E is a matrix visualization and analysis platform that includes heat map, clustering, filtering, charting, marker selection, and many other tools. In addition…

DSEARCH
Desktop

DSEARCH

Allows the user to utilize the idle clock cycles of machines to perform large…

Allows the user to utilize the idle clock cycles of machines to perform large searches using the most sensitive algorithms. DSEARCH is a fully cross-platform parallel database search program that…

DBonto
Data

DBonto

Develops next generation semantics-aware data management systems that are based…

Develops next generation semantics-aware data management systems that are based on a synthesis of ontological reasoning and database management principles. DBonto incorporate techniques from many…

Most Popular Tools

SRADE
Desktop

SRADE Sequence Read Archive Data Extractor

A java based data extraction tool that is used to read and extract required…

A java based data extraction tool that is used to read and extract required data from files in tab delimited text format. SRADE was originally developed for the purpose to extract data from the…

Twease
Web

Twease

A web-based tool to search Medline abstracts. Twease indexes each word of…

A web-based tool to search Medline abstracts. Twease indexes each word of Medline and provides features that can transparently expand your search to help find the information you are looking for.

eTBLAST
Web

eTBLAST

A program designed to identify similar documents within literature databases…

A program designed to identify similar documents within literature databases such as (but not limited to) MEDLINE. These services are freely accessible through the Internet, where users can upload a…

Curators for Text mining

  • Hélène Dauchel's avatar image
    Hélène Dauchel
    LITIS EA 4108 Computer science,…
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