Biomedical text mining analysis software tools and databases

Text mining applications

The scientific literature is the key distribution channel for novel findings and hypotheses from research. As the number of publications continuously grows, retrieving relevant scientific information and identifying connections between pieces of scientific knowledge becomes a…

Biomedical text mining analysis software tools and databases

Most Recent Tools

GExplore GExplore

GExplore

Assists with large-scale data-mining related to gene function in Caenorhabditis…

Assists with large-scale data-mining related to gene function in Caenorhabditis elegans. GExplore contains information about the domain organization of the proteomes of 9 nematode species, can…

Desktop app
text2genome text2genome

text2genome

Extracts DNA sequences from biomedical articles and automatically maps them to…

Extracts DNA sequences from biomedical articles and automatically maps them to genomic databases. text2genome links articles to genes and organisms without relying on gene names or identifiers. It…

Desktop app
rfishbase rfishbase

rfishbase

Provides interactive and programmatic access to the FishBase repository.…

Provides interactive and programmatic access to the FishBase repository. rfishbase allows interaction with data on over 30 000 fish species in the rich statistical computing environment. It enables…

Desktop app
FirebrowseR FirebrowseR

FirebrowseR

Automatically generates, testes and deploys such clients for rapid response to…

Automatically generates, testes and deploys such clients for rapid response to API changes. FirebrowseR provides a raw construct of an R function including all the comments, which will be rendered as…

Most Popular Tools

Desktop app
Sequence Read Archive… Sequence Read Archive Data Extractor

SRADE Sequence Read Archive Data Extractor

A java based data extraction tool that is used to read and extract required…

A java based data extraction tool that is used to read and extract required data from files in tab delimited text format. SRADE was originally developed for the purpose to extract data from the…

Web app
Twease Twease

Twease

A web-based tool to search Medline abstracts. Twease indexes each word of…

A web-based tool to search Medline abstracts. Twease indexes each word of Medline and provides features that can transparently expand your search to help find the information you are looking for.

Web app
eTBLAST eTBLAST

eTBLAST

A program designed to identify similar documents within literature databases…

A program designed to identify similar documents within literature databases such as (but not limited to) MEDLINE. These services are freely accessible through the Internet, where users can upload a…

Curators for Text mining

  • Hélène Dauchel's avatar image
    Hélène Dauchel
    LITIS EA 4108 Computer science,…
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