Biomedical text mining analysis software tools and databases

Text mining applications

The scientific literature is the key distribution channel for novel findings and hypotheses from research. As the number of publications continuously grows, retrieving relevant scientific information and identifying connections between pieces of scientific knowledge becomes a…

Biomedical text mining analysis software tools and databases

Most Recent Tools

Referencer
Desktop

Referencer

Organizes documents or references, and generates a BibTeX bibliography file.…

Organizes documents or references, and generates a BibTeX bibliography file. Referencer can deal with any kind of document that BibTeX can. It searches for key identifiers of any PDF file added such…

RefDB
Desktop

RefDB

Permits to share databases over a network. RefDB consists of an application…

Permits to share databases over a network. RefDB consists of an application server which interacts with a relational database on the server side and a variety of clients on the workstation side. It…

refbase
Desktop

refbase Web Reference Database

Imports and exports references in various formats. refbase can make formatted…

Imports and exports references in various formats. refbase can make formatted lists of citations and offers powerful searching, rich metadata, and RSS. It permits to display lists in compact list,…

Rayyan
Web
Mobile

Rayyan

Helps expedite the initial screening of abstracts and titles using a process of…

Helps expedite the initial screening of abstracts and titles using a process of semi-automation while incorporating a high level of usability. Rayyan lightens the load of systematic review authors by…

Most Popular Tools

SRADE
Desktop

SRADE Sequence Read Archive Data Extractor

A java based data extraction tool that is used to read and extract required…

A java based data extraction tool that is used to read and extract required data from files in tab delimited text format. SRADE was originally developed for the purpose to extract data from the…

tagtog
Web

tagtog

Helps in your workflow for text analysis and database curation. tagtog…

Helps in your workflow for text analysis and database curation. tagtog leverages manual user annotation in combination with automatic machine-learned annotation to provide accurate identification of…

Twease
Web

Twease

A web-based tool to search Medline abstracts. Twease indexes each word of…

A web-based tool to search Medline abstracts. Twease indexes each word of Medline and provides features that can transparently expand your search to help find the information you are looking for.

eTBLAST
Web

eTBLAST

A program designed to identify similar documents within literature databases…

A program designed to identify similar documents within literature databases such as (but not limited to) MEDLINE. These services are freely accessible through the Internet, where users can upload a…

Curators for Text mining

  • Hélène Dauchel's avatar image
    Hélène Dauchel
    LITIS EA 4108 Computer science,…
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