Biomedical text mining analysis software tools and databases

The scientific literature is the key distribution channel for novel findings and hypotheses from research. As the number of publications continuously grows, retrieving relevant scientific information and identifying connections between pieces of…

Text mining applications

Biomedical text mining analysis software tools and databases

Most Recent Tools

MC Lexicon
Dataset

MC Lexicon Molecular Connection Lexicon

Provides thesaurus management system which can be employed to build and manage…

Provides thesaurus management system which can be employed to build and manage information systems. MC Lexicon provides a comprehensive list of application programming interfaces (APIs) for…

Molecular Connection Identify
Dataset

Molecular Connection Identify MC Identify

Facilitates identification of various author related components including…

Facilitates identification of various author related components including co-author profiles, net output of a research organization of interest, and helps in referee searches. MC Identify aggregates…

Gene-disease…
Dataset

Gene-disease Networking

Employs a range of in silico methodologies using internally developed text…

Employs a range of in silico methodologies using internally developed text mining engine to identify, analyze and visualize gene-disease associations. GeneNet has Customized workflows for comparing…

Bio-In
Dataset

Bio-In

Offers the capability to integrate, aggregate, analyze and visualize biomedical…

Offers the capability to integrate, aggregate, analyze and visualize biomedical data from a wide variety of structured and unstructured information repositories. Bio-In combines its extensive…

Most Popular Tools

PubMed
Dataset

PubMed

Comprises more than 24 million citations for biomedical literature from…

Comprises more than 24 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and…

SRADE
Desktop

SRADE Sequence Read Archive Data Extractor

A java based data extraction tool that is used to read and extract required…

A java based data extraction tool that is used to read and extract required data from files in tab delimited text format. SRADE was originally developed for the purpose to extract data from the…

tagtog
Web

tagtog

Helps in your workflow for text analysis and database curation. tagtog…

Helps in your workflow for text analysis and database curation. tagtog leverages manual user annotation in combination with automatic machine-learned annotation to provide accurate identification of…

Twease
Web

Twease

A web-based tool to search Medline abstracts. Twease indexes each word of…

A web-based tool to search Medline abstracts. Twease indexes each word of Medline and provides features that can transparently expand your search to help find the information you are looking for.

Curators for Text mining

  • Hélène Dauchel's avatar image
    Hélène Dauchel
    LITIS EA 4108 Computer science,…
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