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Biomedical text mining software tools and databases

The scientific literature is the key distribution channel for novel findings and hypotheses from research. As the number of publications continuously grows, retrieving relevant scientific information and identifying connections between pieces of…

Text mining applications

Experts in Text mining

They share and annotate bioinformatics tools

  • Hélène Dauchel's avatar image
    Hélène Dauchel
    LITIS EA 4108 Computer science, information processing and systems laboratory, Rouen, France

Most recent bioinformatics tools

MarkerHub
Dataset

MarkerHub

Gathers candidate biomarkers collected from PubMed publications. MarkerHub is a…

Gathers candidate biomarkers collected from PubMed publications. MarkerHub is a HCC-biomarker database that also provides a network visualization tool to assist bioinformaticians in discovering novel…

PEITH(Θ)
Desktop

PEITH(Θ)

Allows experimental design in systems biology. PEITH(Θ) is a general purpose…

Allows experimental design in systems biology. PEITH(Θ) is a general purpose interface that implements algorithms for all three described scenarios: (1) reduction of the uncertainty of the model…

Aether
Desktop

Aether

Allows binding and deployment of combinations of underutilized cloud computing…

Allows binding and deployment of combinations of underutilized cloud computing resources. Aether is a bidding algorithm for cloud computing resources that uses linear programming (LP). The software…

Tarchecksum
Desktop

Tarchecksum

Allows users to verify all files submitted in a tar archive. Tarchecksum can…

Allows users to verify all files submitted in a tar archive. Tarchecksum can realize comparison between files from an archive and an original file. It can return a message describing the problem when…

Most popular analytical software and databases

tagtog
Web

tagtog

Helps in your workflow for text analysis and database curation. tagtog…

Helps in your workflow for text analysis and database curation. tagtog leverages manual user annotation in combination with automatic machine-learned annotation to provide accurate identification of…

PubMed
Dataset

PubMed

Comprises more than 24 million citations for biomedical literature from…

Comprises more than 24 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and…

SRADE
Desktop

SRADE Sequence Read Archive Data Extractor

A java based data extraction tool that is used to read and extract required…

A java based data extraction tool that is used to read and extract required data from files in tab delimited text format. SRADE was originally developed for the purpose to extract data from the…

eLabFTW
Desktop

eLabFTW

Represents an electronic lab notebook. ELabFTW offers different services to…

Represents an electronic lab notebook. ELabFTW offers different services to users. It allows to store content in common file formats (PDF, CSV, JSON, ZIP) and to secure its. Several templates are…

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