Biomedical text mining analysis software tools and databases

Text mining applications

The scientific literature is the key distribution channel for novel findings and hypotheses from research. As the number of publications continuously grows, retrieving relevant scientific information and identifying connections between pieces of scientific knowledge becomes a…

Biomedical text mining analysis software tools and databases

Most Recent Tools

SPARC
Nontypeable

SPARC Scholarly Publishing and Academic Resources Coalition

Enables the open sharing of research outputs and educational materials. SPARC…

Enables the open sharing of research outputs and educational materials. SPARC aims to democratize access to knowledge, accelerate discovery, and increase the return on our investment in research and…

TogoDoc
Desktop
Mobile

TogoDoc

Helps researchers to isolate interesting papers from the ‘‘tsunami’’ of…

Helps researchers to isolate interesting papers from the ‘‘tsunami’’ of literature, in which, on average, more than one biomedical paper is added to MEDLINE every minute. The TogoDoc system…

MITOCLASS.1
Desktop

MITOCLASS.1

Classifies mtDNA missense variants. MITOCLASS.1 has performed better than other…

Classifies mtDNA missense variants. MITOCLASS.1 has performed better than other web-available tested predictors. It allows a better selection of candidate damaging missense variants from mtDNA. The…

ontogetdown
Desktop

ontogetdown

Get ontology term(s) by parent id. ontogetdown finds ontology terms matching a…

Get ontology term(s) by parent id. ontogetdown finds ontology terms matching a query. All children of the term, related to the term by 'is_a' (class/subclass) relationships, are returned.…

Most Popular Tools

SRADE
Desktop

SRADE Sequence Read Archive Data Extractor

A java based data extraction tool that is used to read and extract required…

A java based data extraction tool that is used to read and extract required data from files in tab delimited text format. SRADE was originally developed for the purpose to extract data from the…

tagtog
Web

tagtog

Helps in your workflow for text analysis and database curation. tagtog…

Helps in your workflow for text analysis and database curation. tagtog leverages manual user annotation in combination with automatic machine-learned annotation to provide accurate identification of…

Twease
Web

Twease

A web-based tool to search Medline abstracts. Twease indexes each word of…

A web-based tool to search Medline abstracts. Twease indexes each word of Medline and provides features that can transparently expand your search to help find the information you are looking for.

eTBLAST
Web

eTBLAST

A program designed to identify similar documents within literature databases…

A program designed to identify similar documents within literature databases such as (but not limited to) MEDLINE. These services are freely accessible through the Internet, where users can upload a…

Curators for Text mining

  • Hélène Dauchel's avatar image
    Hélène Dauchel
    LITIS EA 4108 Computer science,…
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