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TF2Network specifications

Information


Unique identifier OMICS_25424
Name TF2Network
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data A set of co-regulated, co-expressed or functionally related Arabidopsis genes.
Output data A list of regulators and the associated target genes, together with the enrichment statistics for each motif and information about co-expression between the input genes and the predicted regulator.
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainer


  • person_outline Klaas Vandepoele <>

Additional information


http://bioinformatics.psb.ugent.be/webtools/TF2Network/

Publication for TF2Network

TF2Network in publication

PMCID: 5732458
PMID: 29246163
DOI: 10.1186/s12918-017-0493-2

[…] tf-target interaction data for plant research []. co-expression and tf-binding site based prediction is another approach to infer tf-target interactions, which has been successfully implemented in tf2network []. these experimentally identified or predicted gene regulatory networks typically contain thousands of nodes and thousands to millions of edges (fig. ) [, ], which provide much […]

TF2Network institution(s)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium; VIB Center for Plant Systems Biology, Ghent, Belgium; Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium
TF2Network funding source(s)
Supported by Research Foundation–Flanders [G001015N]; Agency for Innovation by Science and Technology (IWT) in Flanders (predoctoral fellowship).

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