TFactS pipeline

TFactS specifications

Information


Unique identifier OMICS_11986
Name TFactS
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data Some up-regulated official gene names or Entrez gene IDs.
Programming languages Javascript, Perl, PHP, R
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Jean-Baptiste Demoulin <>

Publications for TFactS

TFactS IN pipelines

 (2)
2017
PMCID: 5289111
PMID: 28168095
DOI: 10.7717/peerj.2831

[…] were extracted as go annotation results, and the corrected p value (benjamini) was required to be no more than 0.05., the target genes of the up or down-regulated mirnas in mm were then submitted to tfacts database (essaghir et al., 2010), a site at: http://www.tfacts.org/. p-value, q-value, e-value and fdr were all applied for prediction of transcription factors, and only the transcription […]

2017
PMCID: 5289111
PMID: 28168095
DOI: 10.7717/peerj.2831

[…] (benjamini) was required to be no more than 0.05., the target genes of the up or down-regulated mirnas in mm were then submitted to tfacts database (essaghir et al., 2010), a site at: http://www.tfacts.org/. p-value, q-value, e-value and fdr were all applied for prediction of transcription factors, and only the transcription factor with these four indexes all less than 0.05 was considered […]

TFactS institution(s)
de Duve Institute, Université Catholique de Louvain, Brussels, Belgium; Division of Hematology, Cliniques Universitaires Saint-Luc, Brussels, Belgium; Bioinformatique des Génomes et des Réseaux (BIGRe), Université Libre de Bruxelles, Brussels, Belgium
TFactS funding source(s)
Région Wallonne de Belgique TransMaze project (415925 linked to 516207); ‘Bourse d’Excellence IN.WBI’ from Wallonie-Bruxelles International, Belgium.

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