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TFBSGroup

Identifies motifs under the ZOMOP constraint. TFBSGroup is an algorithm that extracts dense subgraphs from an N-partite graph using a fast community detection algorithm designed for processing large-scale networks (BGLL). Based on these extracted communities, it refines candidate motifs and their instances towards the true motifs. This method can quickly discover long and weak motifs and their instances.

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TFBSGroup classification

TFBSGroup specifications

Software type:
Application/Script
Restrictions to use:
None
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Unix/Linux
Maintained:
No

TFBSGroup distribution

versioning

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No versioning.

TFBSGroup support

Maintainer

This tool is not available anymore.

Credits

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Publications

Institution(s)

School of Computer and Information Technology, Beijing Jiaotong University, Beijing, China; Department of Bioengineering/Bioinformatics, University of Illinois at Chicago, Chicago, IL, USA

Funding source(s)

Supported in part by the National Nature Science Foundation of China (Grant No. 60905029, 61105055, and 81230086), the Beijing Natural Science Foundation (Grant No. 4112046), and the Fundamental Research Funds for the Central Universities.

Link to literature

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