TFImpute specifications

Information


Unique identifier OMICS_16533
Name TFImpute
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Python
License Other
Computer skills Advanced
Stability Stable
Requirements
Theano
Maintained Yes

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Maintainer


  • person_outline Jianxing Feng <>

Publication for TFImpute

TFImpute in publication

PMCID: 5938574
PMID: 29618526
DOI: 10.1098/rsif.2017.0387

[…] correlation between combinatorial binding landscapes of multiple tfs. given a partially complete panel of binding profiles of multiple tfs in multiple cell types, a deep learning method called tfimpute learns to predict the missing binding profile of a target tf in some target cell type in the panel based on the binding profiles of other tfs in the target cell type and the binding profile […]


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TFImpute institution(s)
Department of Bioinformatics, School of Life Sciences and Technology, Tongji University, Shanghai, China
TFImpute funding source(s)
This project was supported by National Natural Science Foundation of China 31301096 and National Natural Science Foundation of China grant 31329003.

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