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TGRD specifications

Information


Unique identifier OMICS_11773
Name TGRD
Alternative name Tomato Genomic Resources Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Publication for Tomato Genomic Resources Database

TGRD citations

 (4)
library_books

Genome wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato

2017
BMC Genomics
PMCID: 5585987
PMID: 28874115
DOI: 10.1186/s12864-017-4082-y

[…] d and confirmed through comparisons with the iTAK (Plant Transcription factor and Protein Kinase Identifier and Classifier) database (http://bioinfo.bti.cornell.edu/cgi-bin/itak/index.cgi) [] and the Tomato Genomic Resources Database (TGRD) (http://webcache.googleusercontent.com/search?q=cache:UgWJjBHR92EJ:59.163.192.91/tomato2/contact.html+&cd=2&hl=en&ct=clnk&gl=kr = zf-HD) []. All of the predict […]

library_books

Identification of TIFY/JAZ family genes in Solanum lycopersicum and their regulation in response to abiotic stresses

2017
PLoS One
PMCID: 5453414
PMID: 28570564
DOI: 10.1371/journal.pone.0177381

[…] www.gsds.cbi.pku.edu.cn/). The sequence logo for the TIFY domain and Jas motif were generated with Domain Drawer (www.weblogo.berkeley.edu).The promoter sequences of all SlJAZ genes were obtained in Tomato Genomic Resources Database (www.59.163.192.91/tomato2/index.html) and analyzed with PlantCare (www.bioinformatic.psb.ugent.be/webtools/plantcare) []. […]

library_books

Molecular Characterization and Expression Profiling of Tomato GRF Transcription Factor Family Genes in Response to Abiotic Stresses and Phytohormones

2017
Int J Mol Sci
PMCID: 5454968
PMID: 28505092
DOI: 10.3390/ijms18051056

[…] s Network (SGN) (https://solgenomics.net/search/locus) []. iTAK-Plant Transcription factor and Protein Kinase Identifier and Classifier (http://bioinfo.bti.cornell.edu/cgi-bin/itak/index.cgi) [], and Tomato genomic Resources database (http://59.163.192.91/tomato2/getTF_family.php?trans_fac_family=zf-HD) []. Conserved domains were identified using the SMART conserved domain search tool (http://smar […]

library_books

NexGenEx Tom: a gene expression platform to investigate the functionalities of the tomato genome

2015
BMC Plant Biol
PMCID: 4340097
PMID: 25849067
DOI: 10.1186/s12870-014-0412-2

[…] alternative, web based resources have been developed to offer immediate views on the results. For instance, in plants, several databases organizes NGS based collections [for the TIGR, soybean, Maize, TGRD, SGN and TFGD]. These platforms, each in a specific context, usually are devoted to organize the main NGS data for a species and, often, also analytical tools and appropriate query systems, possi […]


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TGRD institution(s)
National Institute of Plant Genome Research, New Delhi, India
TGRD funding source(s)
This work was financially supported by the core grant of National Institute of Plant Genome Research, New Delhi, India and the Department of Biotechnology, Government of India.

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