TGS-TB statistics

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TGS-TB specifications

Information


Unique identifier OMICS_27239
Name TGS-TB
Alternative name Total Genotyping Solution for Mycobacterium Tuberculosis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Makoto Kuroda <>

Publication for Total Genotyping Solution for Mycobacterium Tuberculosis

TGS-TB in publications

 (2)
PMCID: 5821347
PMID: 29466411
DOI: 10.1371/journal.pone.0192351

[…] of the same global lineage, and the presence of spatiotemporal links between cases. furthermore, in silico spoligotyping of the isolates was performed using the total genotyping solution for tb (tgs-tb) database [] and compared with published data on mtbc genotypes in the patient’s country/region of origin., cases were 72.2% male (n = 13), 27.8% female (n = 5) (). the age of patients at date […]

PMCID: 4880099
PMID: 27191040
DOI: 10.3201/eid2206.152051

[…] information sequence read archive (project no. prjna305488)., the short sequencing reads were subjected to analysis by using the spotyping program (https://github.com/xiaeryu/spotyping) () and the tgs-tb online tool (https://gph.niid.go.jp/tgs-tb/) () to deduce their spoligoprofile. we used the tgs-tb tool to map the is6110 insertion sites and detect drug resistance mutations. the reads also […]


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TGS-TB institution(s)
Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan; Molecular Epidemiology Division, The Research Institute of Tuberculosis/Japan Anti-Tuberculosis Association, Tokyo, Japan; Department of Infectious Diseases, Kobe Institute of Health, Kobe, Japan; Bacteriology Division, Department of Mycobacterium Reference and Research, Research Institute of Tuberculosis, Japan Anti-Tuberculosis Association, Tokyo, Japan; Research Institute of Tuberculosis, Japan Anti-Tuberculosis Association, Tokyo, Japan
TGS-TB funding source(s)
Supported by a Grant in-Aid for Research on Emerging and Re-emerging Infectious Diseases (H25-Shinko-Ippan-015) from the Ministry of Health Labour and Welfare Programs of Japan, and by Research Program on Emerging and Re-emerging Infectious Diseases (15fk0108011h0003 and 15fk0108004h0001) from Japan Agency for Medical Research and development, AMED.

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