The Banana Genome Hub statistics

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Number of citations per year for the bioinformatics software tool The Banana Genome Hub
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The Banana Genome Hub specifications

Information


Unique identifier OMICS_06476
Name The Banana Genome Hub
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Gaëtan Droc

Publication for The Banana Genome Hub

library_books

The Banana Genome Hub

2013
PMCID: 3662865
PMID: 23707967
DOI: 10.1093/database/bat035

The Banana Genome Hub citations

 (14)
library_books

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases

2017
PMCID: 5727400
DOI: 10.1093/database/bax092

[…] ignificantly reduces the time and cost for database construction and management resulting in its increasing adoption by many communities. Some example databases using Tripal include GeneNetEngine (), the Banana Genome Hub (http://banana-genome.cirad.fr/) (), CottonGen (https://www.cottongen.org/) (), the Genome Database for Rosaceae (GDR, http://www.rosaceae.org) (), Knowpulse: Pulse Crop Genomics […]

library_books

Regulation of Banana Phytoene Synthase (MaPSY) Expression, Characterization and Their Modulation under Various Abiotic Stress Conditions

2017
Front Plant Sci
PMCID: 5377061
PMID: 28421096
DOI: 10.3389/fpls.2017.00462

[…] The whole genome sequence of banana (Musa acuminata) was downloaded from the Banana Genome Hub database (D'Hont et al., ; http://banana-genome.cirad.fr/) and used for the identification of PSY gene. BLAST search was performed using annotated PSY sequences of maize (Zea may […]

library_books

Global Transcriptomic Analysis of Targeted Silencing of Two Paralogous ACC Oxidase Genes in Banana

2016
Int J Mol Sci
PMCID: 5085665
PMID: 27681726
DOI: 10.3390/ijms17101632

[…] ACC oxidase plays a key role in ethylene biosynthesis for the conversion of ACC to ethylene []. However, 18 paralogs of ACC oxidase genes exist in the Banana Genome Hub using the Blastx tool. The contribution of each member of the ACC oxidase multigene family with respect to growth and development in banana life cycle remains to be elucidated. B […]

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Evolutionary Expansion of WRKY Gene Family in Banana and Its Expression Profile during the Infection of Root Lesion Nematode, Pratylenchus coffeae

2016
PLoS One
PMCID: 5014340
PMID: 27603787
DOI: 10.1371/journal.pone.0162013
call_split See protocol

[…] The 153 Musa acuminata WRKY protein and nucleotide sequences were obtained from the Banana Genome Hub (http://banana-genome.cirad.fr/). Arabidopsis WRKY protein sequences were obtained as reference from The Arabidopsis Information Resource (TAIR). Complete CD sequences were separ […]

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Genome wide Expression Analysis and Metabolite Profiling Elucidate Transcriptional Regulation of Flavonoid Biosynthesis and Modulation under Abiotic Stresses in Banana

2016
Sci Rep
PMCID: 4990921
PMID: 27539368
DOI: 10.1038/srep31361
call_split See protocol

[…] The whole genome sequence of banana (Musa acuminata) was downloaded from the Banana Genome Hub database (http://banana-genome.cirad.fr/). BLAST searches were performed using sequences of Zea mays, Oryza sativa, Arabidopsis thaliana, Populus tremuloides and Vitis vinifera a […]

library_books

Genome wide identification and expression profiling reveal tissue specific expression and differentially regulated genes involved in gibberellin metabolism between Williams banana and its dwarf mutant

2016
BMC Plant Biol
PMCID: 4884393
PMID: 27234596
DOI: 10.1186/s12870-016-0809-1

[…] We searched two CPS-like complete cDNA sequences (MaCPS2 and MaCPS3) and one CPS-like (MaCPS1, GSMUA_Achr8T31500_001) fragment sequence in the Banana Genome Hub and then searched the complete cDNA sequence of MaCPS1 in NCBI. The three genes were all located in chromosome 8. MaCPS1 presented 98.54 and 84.27 % identities with MaCPS2 and Ma […]


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The Banana Genome Hub institution(s)
CIRAD, UMR AGAP, Montpellier, France; Montpellier SupAgro, UMR AGAP, Montpellier, France; Bioversity International, Commodity Systems & Genetic Resources Programme, Montpellier, France; IRD, UMR RPB, Montpellier, France
The Banana Genome Hub funding source(s)
This work was funded by ANR Genoplante (grant ANR-07-GPLA-004 GNPAnnot); ANR Plant Genomics (grant ANR-08-GENM-V019 Musatract); CGIAR Research Project Root Tuber and Bananas (CRPRTB).

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