The FLUX CAPACITOR specifications

Information


Unique identifier OMICS_01293
Name The FLUX CAPACITOR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An annotation of a reference transcriptome and reads fromRNAseq technologies aligned to the genome.
Input format FASTA+GTF
Output data Some reads and mappings
Output format SAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.6.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Michael Sammeth <>

The FLUX CAPACITOR articles

The FLUX CAPACITOR citation

2016
PMCID: 4807760

[…] mrna quantification was calculated at different levels. for exon quantification, overlapping exons of a gene were first merged into meta-exons. transcripts and splice junctions were quantified by the flux capacitor approach [8]. gene quantification was calculated as the sum of all transcript rpkms (reads per kilobase per million) for each gene. before eqtl analysis, expression quantifications […]

The FLUX CAPACITOR institution(s)
Bioinformatics and Genomics Program, Centre de Regulacio Genomica (CRG), Barcelona, Spain; Functional Bioinformatics Group, Centre Nacional d’Analisi Genomica (CNAG), Barcelona; Computational Biology and Regulatory Networks Group, Gene Center Munich, Munich, Germany; Algorithm Development Group, Centre Nacional d’Analisi Genomica (CNAG), Barcelona, Spain; Statistical Genomics Group, Centre Nacional d’Analisi Genomica (CNAG), Barcelona, Spain; Biometrie et Biologie Evolutive, Universite Lyon 1, Villeurbanne, France
The FLUX CAPACITOR funding source(s)
Supported by the European Science Foundation, an Erasmus exchange grant of the European Community, a Post-doctoral fellowship of the Spanish Ministry of Science and Open Source license of Atlassian for their products Jira, Confluence and Fisheye and the Spanish Ministry of Science [BIO2006-03380 and CONSOLIDER CSD2007-00050].

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