The FLUX CAPACITOR specifications
- Unique identifier:
- OMICS_01293
- Software type:
- Application/Script
- Restrictions to use:
- None
- Input format:
- FASTA+GTF
- Output format:
- SAM
- Programming languages:
- Java
- Version:
- 1.6.1
- Maintained:
- Yes
- Alternative name:
- Flux Simulator
- Interface:
- Command line interface
- Input data:
- An annotation of a reference transcriptome and reads fromRNAseq technologies aligned to the genome.
- Output data:
- Some reads and mappings
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Advanced
- Stability:
- Stable
versioning
No versioning.
The FLUX CAPACITOR distribution
download
The FLUX CAPACITOR support
Documentation
Maintainer
- Michael Sammeth <>
forum
No open topic.
Credits
Publications
-
(Montgomery et al., 2010)
Transcriptome genetics using second generation sequencing in a Caucasian population.
Nature.
PMID: 20220756 DOI: 10.1038/nature08903 -
(Griebel et al., 2012)
Modelling and simulating generic RNA-Seq experiments with the flux simulator.
Nucleic Acids Res.
PMID: 22962361 DOI: 10.1093/nar/gks666
Institution(s)
Bioinformatics and Genomics Program, Centre de Regulacio Genomica (CRG), Barcelona, Spain; Functional Bioinformatics Group, Centre Nacional d’Analisi Genomica (CNAG), Barcelona; Computational Biology and Regulatory Networks Group, Gene Center Munich, Munich, Germany; Algorithm Development Group, Centre Nacional d’Analisi Genomica (CNAG), Barcelona, Spain; Statistical Genomics Group, Centre Nacional d’Analisi Genomica (CNAG), Barcelona, Spain; Biometrie et Biologie Evolutive, Universite Lyon 1, Villeurbanne, France
Funding source(s)
Supported by the European Science Foundation, an Erasmus exchange grant of the European Community, a Post-doctoral fellowship of the Spanish Ministry of Science and Open Source license of Atlassian for their products Jira, Confluence and Fisheye and the Spanish Ministry of Science [BIO2006-03380 and CONSOLIDER CSD2007-00050].
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