The Genetic Map Comparator specifications

Information


Unique identifier OMICS_14931
Name The Genetic Map Comparator
Interface Web user interface
Restrictions to use None
Input data The genetic maps to compare.
Output data The summary statistics view, the compare positions view, the interchromosome analysis view, the raw data view.
Programming languages R
Computer skills Basic
Version 1.0
Stability Stable
Requirements
shiny
Maintained Yes

Documentation


Maintainer


  • person_outline Yan Holtz <>

Information


Unique identifier OMICS_14931
Name The Genetic Map Comparator
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data The genetic maps to compare.
Output data The summary statistics view, the compare positions view, the interchromosome analysis view, the raw data view.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Medium
Version 1.0
Stability Stable
Requirements
shiny
Maintained Yes

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Versioning


Add your version

Documentation


Maintainer


  • person_outline Yan Holtz <>

Publication for The Genetic Map Comparator

The Genetic Map Comparator in publications

 (2)
PMCID: 5487049
PMID: 28654689
DOI: 10.1371/journal.pone.0179747

[…] orders and marker positions between consensus and component lgs., the consistency of marker order and possible rearrangement between the component maps and consensus genetic map was compared using the genetic map comparator software []. between the three maps, a total of 19 markers were common to all the maps and 183 markers were common in pairs of maps. for example, the correspondence among […]

PMCID: 5487696
PMID: 28451771
DOI: 10.1007/s00122-017-2904-6

[…] common markers between the ds- and dl-maps were used to build a consensus map containing all the markers using the carthagene dsmergen function. genetic maps were characterized and compared using the genetic map comparator web application (holtz et al. ). once the marker positions were set, missing data were attributed using the callparentallelesplugin of tassel (glaubitz et al. ). finally, […]


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The Genetic Map Comparator institution(s)
Montpellier SupAgro, UMR AGAP, Montpellier, France
The Genetic Map Comparator funding source(s)
This work was partially funded by the French Agence Nationale de la Recherche Investissements d'avenir/Bioinformatique: ANR-10-BINF-01-02, Ancestrome.

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