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The Interactome

Visualizes interactions of transcription factors (TFs) in human, mouse and plant cell types. The Transcription Factor Regulatory Networks browser facilitates the comparison and exploration of transcription factor interactions between a variety of cell types. Interaction, genes and cell types can be selected, as well as export network graphs to text and SVG for downstream analysis and editing.

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The Interactome classification

  • Animals
    • Homo sapiens
    • Mus musculus
  • Plants

The Interactome specifications

Interface:
Web user interface
Output data:
A gene network.
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Output format:
TXT, SVG
Stability:
Stable

The Interactome support

Maintainer

  • John Stamatoyannopoulos <>

Credits

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Publications

Institution(s)

Department of Genome Sciences, University of Washington, Seattle, WA, USA; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Department of Biological Structure, University of Washington, Seattle, WA, USA; Department of Comparative Medicine, University of Washington, Seattle, WA, USA; Division of Radiation Oncology, University of Washington, Seattle, WA, USA; Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Department of Pediatrics, University of Washington, Seattle, WA, USA; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA; Santa Fe Institute, Santa Fe, NW, USA

Funding source(s)

This work was supported by NIH grants U54HG004592, U54HG007010 and U01ES01156; RC2HG005654 and R37 DK44746, FDK095678A from NIDDK

Link to literature

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