NASP specifications

Unique identifier:
OMICS_11190
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output format:
matrix, VCF, FASTA
Programming languages:
Python
Version:
1.0.0
Requirements:
SAMmtools, Trimmomatic, MUMmer
Name:
The Northern Arizona SNP Pipeline
Interface:
Command line interface
Input format:
FASTA, BAM, SAM, VCF, FASTQ, FASTQ.GZ
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
  • Eubacteria

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NASP distribution

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NASP support

Maintainer

  • Darrin Lemmer <>

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Publications

Institution(s)

Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, AZ, USA; Translational Genomics Research Institute, Flagstaff, AZ, USA; The George Washington University, Washington DC, USA; University of New Hampshire, Durham, NH, USA

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