The Phosphorylation Site Database specifications

Information


Unique identifier OMICS_20955
Name The Phosphorylation Site Database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

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Publication for The Phosphorylation Site Database

The Phosphorylation Site Database citations

 (2)
library_books

Identification of Phosphorylated Cyclin Dependent Kinase 1 Associated with Colorectal Cancer Survival Using Label Free Quantitative Analyses

2016
PLoS One
PMCID: 4934865
PMID: 27383761
DOI: 10.1371/journal.pone.0158844

[…] een reported in the PhosphoSitePlus database (PSP, http://www.phosphosite.org/) for protein phosphorylation sites []. A total of 103 (35.9%, 103/287) sites were predicted as potential pTyr sites from the phosphorylation site database (PHOSIDA, http://www.phosida.com/) [, ]. By combining these two results that 186 (64.8%) sites with either tyrosine phosphorylation sites (or predicted as possible su […]

library_books

Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen starved Arabidopsis seedlings

2012
Plant J
PMCID: 3380553
PMID: 22060019
DOI: 10.1111/j.1365-313X.2011.04848.x

[…] M score was >40 and/or site-determining b or y ions were present. Annotated spectra of all phosphopeptides are shown in . All phosphopeptides, including their fragment spectra, have been submitted to the phosphorylation site database PHOSPHAT (http://phosphat.mpimp-golm.mpg.de) and are publicly available. […]

The Phosphorylation Site Database institution(s)
Department of Biochemistry and Virginia Institute for Genomics, Blacksburg, VA, USA; Information Systems for Biotechnology, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
The Phosphorylation Site Database funding source(s)
Supported by the Department of Biochemistry, Information Systems for Biotechnology (ISB), the Virginia Institute for Genomics (VIGEN), and the Agriculture Human National Resources Information Technology (AHNRIT) program in the College of Agriculture and Life Sciences at Virginia Polytechnic Institute and State University; and grants MCB 0077484 and MCB 0315122 from the National Science Foundation.

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