The R Project for Statistical Computing protocols

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The R Project for Statistical Computing specifications

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Unique identifier OMICS_01147
Name The R Project for Statistical Computing
Alternative name R
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 3.4.1
Stability Stable
Source code URL https://cran.r-project.org/src/base/
Maintained Yes

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Manuals: https://cran.r-project.org/manuals.html R Tutorial: http://www.r-tutor.com/

The R Project for Statistical Computing in pipelines

 (4)
2018
PMCID: 5798889
PMID: 29423269
DOI: 10.1038/s41421-017-0001-2

[…] vivo data. comparisons between the multiple experimental groups were made using turkey-kramer test for in vitro data, and steel-dwass test for in vivo data. statistical analyses were conducted with the r project for statistical computing (version r-3.3.2). we calculated the degree of similarity between drug sensitivity and gene expression using the pearson correlation coefficient, […]

2015
PMCID: 4380257
PMID: 25886993
DOI: 10.1186/s12863-015-0183-2

[…] 2 = no slip, 3 = half slip, 4 = full slip., the genetic diversity of the germplasm collection as a whole was assessed by principal component analysis (pca) using the ‘adegenet 1.4-0’ package in the r project for statistical computing (version r.14.1; www.r-project.org) [,]. the population genetic structure was also analyzed with structure v.2.3.3 software []. twenty independent runs […]

2012
PMCID: 3499245
PMID: 23166508
DOI: 10.1371/journal.pgen.1003035

[…] median size 341 bp, and mean size 445 bp (standard deviation 295 bp). transcript contigs have accession numbers he687510 to he716431., analysis of the bdelloid transcriptome was performed using r (the r project for statistical computing, http://www.r-project.org/) complemented with ncbi-blast 2.2.23+–2.2.25+ (basic local alignment search tool) , clustalw2 (embl-ebi) and phyml 3.0 . blastx […]

2010
PMCID: 2900295
PMID: 20628624
DOI: 10.1371/journal.pgen.1001016

[…] ethnicities were additionally adjusted for ethnicity. forest plots generated in exploratory analyses according to histological subtype were obtained using the rmeta library (v2.15) implemented in the r project for statistical computing (http://www.r-project.org/), and ld plots were generated using haploview v4.1 . all tests for association were two-tailed, and unless otherwise specified, […]


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The R Project for Statistical Computing in publications

 (371)
PMCID: 5938712
PMID: 29724998
DOI: 10.1038/s41419-018-0526-9

[…] from three different donors were pooled and used for whole-genome array (agilent 44k) measurements. two individual arrays were performed for each condition. data were analyzed and mined using the r project for statistical computing. measured spot intensities were normalized within and across arrays. values were log2-transformed. for several genes of interest the relative log2 fold change […]

PMCID: 5929519
PMID: 29715289
DOI: 10.1371/journal.pone.0196075

[…] climatic variables mentioned above. finally, we also checked for intraspecific safety-efficiency trade-offs, with spearman´s or pearson´s correlation tests., statistical analyses were performed with the r project for statistical computing (r development core team, 2016) []., xylem vulnerability curves followed a sigmoid function in all species (, ), showing the lack of an open vessel artefact […]

PMCID: 5944526
PMID: 29703051
DOI: 10.1097/MD.0000000000010579

[…] significant. all tests have to be understood in the area of exploratory data analysis. therefore, no adjustments for multiple testing have been made. all numerical calculations were performed with the r project for statistical computing, version 3.2.2 (r-packages used: foreign, gplots, nparld, survival, proc)., the trial was stopped for futility after a total of 63 patients were enrolled […]

PMCID: 5915461
PMID: 29691396
DOI: 10.1038/s41467-018-04096-w

[…] europe (here delineated by the 28 countries of the european union as well as norway, switzerland, liechtenstein, bosnia and herzegovina, macedonia, serbia, montenegro, and albania), using the r project for statistical computing., as statistical distribution modeling of invasive species is inherently uncertain, we used a consensus prediction based on two ensembles of different […]

PMCID: 5892902
PMID: 29634737
DOI: 10.1371/journal.pone.0194117

[…] by the ethics committee of the pomeranian medical university in szczecin (kb-0012/137/15). the follow-up analysis is planned as a multi-centre study., the statistical analysis was performed using r (the r project for statistical computing)- version 3.2.3. in descriptive statistics the following tests were used: fisher’s exact test to establish differences in proportions, t-test to establish […]


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