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The Resistome specifications

Information


Unique identifier OMICS_31914
Name The Resistome
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Maintainer


This tool is not available anymore.

Additional information


https://bitbucket.org/jdwinkler/resistome_release/overview https://resistome-web-interface.herokuapp.com/summary

Publications for The Resistome

The Resistome citations

 (31)
call_split

Draft Genome Sequence of Multidrug Resistant Escherichia coli NIVEDI P44, Isolated from a Chicken Fecal Sample in Northeast India

2018
Genome Announc
PMCID: 5920187
PMID: 29700135
DOI: 10.1128/genomeA.00205-18
call_split See protocol

[…] rboring such genetic resistance determinants and circulating in constantly changing environments contribute to the resistance gene pool, raising the public health threat. Therefore, diligent study of the resistome and mobilome of MDR strains widely disseminated in various environments through comparative genome evaluation will enable us to acquire information about the emergence of resistance. […]

call_split

Impact of sequencing depth on the characterization of the microbiome and resistome

2018
Sci Rep
PMCID: 5897366
PMID: 29651035
DOI: 10.1038/s41598-018-24280-8
call_split See protocol

[…] ld of 0.05 was used in the classification pipeline to enhance the accuracy of taxonomic assignments. Reports of the taxonomic classification of reads were generated with Kraken’s report function. For the resistome analysis, the quality-filtered reads were provided as input to BWA-MEM alignment using default parameters including a mismatch penalty value of 4 to the MEGARes AMR genes database, witho […]

library_books

Impact of human associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131

2018
Sci Rep
PMCID: 5856829
PMID: 29549276
DOI: 10.1038/s41598-018-22943-0

[…] ns and STs (7 gene scheme) predicted by EnteroBase (https://enterobase.warwick.ac.uk/) was in agreement with the experimental data, with the exception of adk allele EC-24 that could not be predicted. The resistome of the draft genome, analysed using ResFinder showed the presence of antimicrobial resistance determinants blaTEM-1C and tet(A) in EC-23, EC-24 and EC-77, while PlasmidFinder allowed the […]

library_books

On Burkholderiales order microorganisms and cystic fibrosis in Russia

2018
BMC Genomics
PMCID: 5836817
PMID: 29504898
DOI: 10.1186/s12864-018-4472-9

[…] . Allele OXA-258 is typical for A. ruhlandii, OXA-114 for A. xylosoxidans and A. marplatensis, and OXA-364 for A. dolens [].Aminoglycoside phosphotransferase and macrolide glycosyltransferase amplify the resistome of BcenST709, but only aminoglycoside acetyltransferases complete the resistome of AruhST36.Active transport is one of the most important mechanisms that determine resistance of microbia […]

library_books

In depth resistome analysis by targeted metagenomics

2018
Microbiome
PMCID: 5769438
PMID: 29335005
DOI: 10.1186/s40168-017-0387-y

[…] The resistome of a given experiment was analyzed in terms of gene abundance and gene diversity according to the methodology described above. The abundance and the diversity of genes in a particular re […]

library_books

Physiological and Comparative Genomic Analysis of Arthrobacter sp. SRS W 1 2016 Provides Insights on Niche Adaptation for Survival in Uraniferous Soils

2018
Genes
PMCID: 5793183
PMID: 29324691
DOI: 10.3390/genes9010031

[…] Antibiotic resistance genes (the resistome), present in strain SRS-1-W-2016, were identified using the Comprehensive Antibiotic Resistance Database (“CARD”) pipeline []. CARD is a repository of curated sequences and SNPs assemble […]

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The Resistome funding source(s)
Supported by the Fulbright Foundation-Taiwan and the Department of Energy. Resistome V2 (the Tolerome), the National Science Foundation, the Department of Energy Genome Sciences Project (#DE-SC008812), and the William Keck Foundation (#OCG6145B).

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