The Tomato Expression Atlas statistics

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Citations per year

Number of citations per year for the bioinformatics software tool The Tomato Expression Atlas

Tool usage distribution map

This map represents all the scientific publications referring to The Tomato Expression Atlas per scientific context
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Associated diseases


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The Tomato Expression Atlas specifications


Unique identifier OMICS_17538
Name The Tomato Expression Atlas
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data Informations about genes.
Output format Tab, images
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Database management system PostgreSQL
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Lukas Mueller

Additional information

The database can not be browsed anymore at http://tea.solgenom/ but the data still be available at

Publication for The Tomato Expression Atlas


The Tomato Expression Atlas.

2017 Bioinformatics
PMCID: 5860121
PMID: 28379331
DOI: 10.1093/bioinformatics/btx190

The Tomato Expression Atlas citation


High resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening

Nat Commun
PMCID: 5785480
PMID: 29371663
DOI: 10.1038/s41467-017-02782-9

[…] sion of ripening between external and internal tissues at this early ripening stage, as also evidenced by differences in pigmentation (Supplementary Fig. ).The transcriptome data were integrated into the Tomato Expression Atlas (TEA; database, which includes two- and three-dimensional anatomical visualization of tomato fruit internal structures obtained by light micros […]

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The Tomato Expression Atlas institution(s)
Boyce Thompson Institute, Ithaca, NY, USA; Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA; U.S. Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA
The Tomato Expression Atlas funding source(s)
Supported by a grant from the US National Science Foundation (Plant Genome Research Program; IOS-1339287).

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