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Thermodynamic tools

The laws of thermodynamics describe a direct, quantitative relationship between metabolite concentrations and reaction directionality. Despite great efforts, thermodynamic data suffer from limited coverage, scattered accessibility and non-standard…
TECRDB
Dataset

TECRDB Thermodynamics of Enzyme-Catalyzed Reactions DataBase

A comprehensive collection of thermodynamic data on enzyme-catalyzed reactions.…

A comprehensive collection of thermodynamic data on enzyme-catalyzed reactions. The data, which consist of apparent equilibrium constants and calorimetrically determined molar enthalpies of reaction,…

PROXiMATE
Dataset

PROXiMATE

Provides unbiased training and validation datasets for the development of…

Provides unbiased training and validation datasets for the development of algorithms to predict binding affinity changes due to missense mutations. The PROXiMATE database helps about the study of…

ProTherm
Dataset

ProTherm

A collection of numerical data of thermodynamic parameters such as Gibbs free…

A collection of numerical data of thermodynamic parameters such as Gibbs free energy change, enthalpy change, heat capacity change, transition temperature etc. for wild type and mutant proteins that…

CalR
Desktop

CalR

Offers a platform for performing a statistical analysis of indirect calorimetry…

Offers a platform for performing a statistical analysis of indirect calorimetry data. CalR is an open source software that provides six standardized templates suited for common practices. The…

eQuilibrator
Desktop
Web

eQuilibrator

A simple web interface designed to enable easy thermodynamic analysis of…

A simple web interface designed to enable easy thermodynamic analysis of biochemical systems. eQuilibrator enables free-text search for biochemical compounds and reactions and provides thermodynamic…

von Bertalanffy
Desktop

von Bertalanffy

An algorithmic pipeline for quantitative assignment of reaction directionality…

An algorithmic pipeline for quantitative assignment of reaction directionality in multi-compartmental genome scale models based on an application of the second law of thermodynamics to each reaction.…

anNET
Desktop

anNET

Allows users to rapidly integrate quantitative metabolome data obtained from…

Allows users to rapidly integrate quantitative metabolome data obtained from virtually any organism. anNET provides the systems biology and metabolic engineering communities with a mean to proof the…

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