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TIGER specifications

Information


Unique identifier OMICS_13072
Name TIGER
Alternative name Tree Independent Generation of Evolutionary Rates
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Molecular, morphological
Input format FASTA
Output data Sites depending on their agreement score, rank values rather than bin numbers, sorted ranks
Output format NEXUS
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.02
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline James O. McInerney

Publication for Tree Independent Generation of Evolutionary Rates

TIGER citations

 (3)
call_split

Hostplant change and paleoclimatic events explain diversification shifts in skipper butterflies (Family: Hesperiidae)

2017
BMC Evol Biol
PMCID: 5541431
PMID: 28768477
DOI: 10.1186/s12862-017-1016-x
call_split See protocol

[…] ylidae, which is the sister family to Hesperiidae [], were acquired from Genbank and treated as outgroups. We estimated the most appropriate partitioning scheme for the data matrix using TIGER v1.02 (Tree Independent Generation of Evolutionary Rates) [] and the nucleotide substitution models for the partitions by PartitionFinder v1.1.1 []. We assumed a relaxed clock model that allowed branch lengt […]

library_books

Multiple measures could alleviate long branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)

2017
Sci Rep
PMCID: 5264392
PMID: 28120880
DOI: 10.1038/srep41005

[…] PCG-Iss-73”, “PCG-slope-70” and “PCG-R2-71” matrices were built by removing saturated genes detected in these two analyses.Fifth, we built rate-partitioned data subsets. Observed variability (OV) and Tree Independent Generation of Evolutionary Rates (TIGER) methods were used to measure the relative evolutionary rate for each of the aligned nucleotide sites in PCG. Using methods previously describe […]

call_split

Ten genes and two topologies: an exploration of higher relationships in skipper butterflies (Hesperiidae)

2016
PeerJ
PMCID: 5144725
PMID: 27957386
DOI: 10.7717/peerj.2653
call_split See protocol

[…] lyses, we used the GTR model of substitution with gamma model of rate heterogeneity (GTR+G) and different partition schemes, either gene-based or based on rates of evolution calculated by the program Tree Independent Generation of Evolutionary Rates (TIGER) (). In gene-based partitions each gene was considered as a separate partition, while in TIGER-based partitions, the characters were binned tog […]

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TIGER institution(s)
Molecular Evolution and Bioinformatics Unit, Department of Biology, National University of Ireland, Maynooth, Co Kildare, Ireland
TIGER funding source(s)
This work was supported by a Science Foundation Ireland Research Frontiers Programme award [07/RFP/ EEEOBF654].

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