Tight clustering pipeline

Tight clustering specifications

Information


Unique identifier OMICS_14504
Name Tight clustering
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements base, utils, stats
Source code URL http://tsenglab.biostat.pitt.edu/software/tightClust/tightClust_src.zip
Maintained Yes

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Maintainer


  • person_outline George Tseng <>

Publication for Tight clustering

Tight clustering IN pipeline

2016
PMCID: 4913315
PMID: 27321784
DOI: 10.1038/srep28261

[…] 2 fold change (fc) and p values <0.05 (table s3). figure 3a illustrates the hierarchical clustering of gene expression patterns shared by the samples. the principal component analysis confirmed tight clustering of the control samples (fig. 3b). there was more variability within the trachoma samples, with f11 in particular clustering closer to controls., go-elite software was used […]

Tight clustering institution(s)
Department of Biostatistics and Department of Human Genetics, University of Pittsburgh, Pittsburgh, PA, USA; Department of Statistics and Department of Biostatistics, Harvard University, Cambridge, MA, USA
Tight clustering funding source(s)
This work was supported by NSF grant DMS-0090166.

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