TIGRA pipeline

TIGRA specifications

Information


Unique identifier OMICS_04667
Name TIGRA
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input format BAM
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ken Chen <>

Publication for TIGRA

TIGRA IN pipeline

2014
PMCID: 4222731
PMID: 25375929
DOI: 10.1371/journal.pntd.0003261

[…] reads were obtained from 4 distinct pools (sequenced as 4 different samples – see table s1) and were separately assembled de novo using a newbler assembler (454 life sciences, branford, ct, usa) or tigra [17], respectively. the resulting 454 and illumina contigs obtained for each pool were then aligned to the corresponding sequences (representing each pool sequence) of the reference cdc-2 […]

TIGRA institution(s)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA

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