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TileQC specifications


Unique identifier OMICS_02114
Name TileQC
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No


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Publication for TileQC

TileQC citations


Large scale contamination of microbial isolate genomes by Illumina PhiX control

Stand Genomic Sci
PMCID: 4511556
PMID: 26203331
DOI: 10.1186/1944-3277-10-18

[…] for first generation sequence data) and ncbi’s vecscreen and univec [,] to get rid of contaminants of vector origin. more recent programs have been designed for analyzing ngs data such as tileqc [], fastqc [], prinseq [], ngs-qc [], programs to detect contamination such as deconseq [], as well as multi genome alignment (mga) [] and qc-chain [] which can provide both rapid qc […]


A survey of tools for variant analysis of next generation genome sequencing data

Brief Bioinform
PMCID: 3956068
PMID: 23341494
DOI: 10.1093/bib/bbs086

[…] and visualization functionality. in addition, software tools have been published that support only the illumina platform (i.e. fastx-toolkit (http://hannonlab.cshl.edu/fastx_toolkit), piqa [] and tileqc []) or provide certain specialized functionality (i.e. tagcleaner [])., after reads have been processed to meet a certain quality standard, they are usually aligned to an existing reference […]


Addressing challenges in the production and analysis of illumina sequencing data

BMC Genomics
PMCID: 3163567
PMID: 21801405
DOI: 10.1186/1471-2164-12-382

[…] illumina's genome studio. different commercial as well as free programs are available that replace some parts of the processing such as image analysis [], base calling [-], quality assessment (e.g. tileqc [] or fastqc []), mapping [-], as well as downstream data analysis and processing [,-]. there is a large community of users and developers for the illumina platform; the http://seqanswers.com […]

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TileQC institution(s)
Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, USA
TileQC funding source(s)
Supported by the National Institutes of Health and the OSU Computational and Genome Biology Initiative.

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