timeClip statistics

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timeClip specifications


Unique identifier OMICS_25553
Name timeClip
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for timeClip

timeClip in publications

PMCID: 4908359
PMID: 27307609
DOI: 10.1093/bioinformatics/btw275

[…] ()., to incorporate pathway information for the time series data analysis, pathways are modeled as graphs. two recent graph-based pathway analysis algorithms for time-series data are trap () and timeclip (). trap () leverages the technique similar to spia () to detect pathways with a significant expression propagation along the pathway graph in the time order. timeclip () employs a junction […]

PMCID: 4624643
PMID: 26510531
DOI: 10.1186/s40246-015-0050-2

[…] over time with distance-based, model-based, and template-based methods []. there are also several other packages available in r such as masigpro [], timecourse [], bat [], betr [], fpca [], timeclip [], rnits [], and stem []., python probabilistic graphical query language (pgql) [] allows its user to interactively define linear hmm queries on time-course data using rectangular graphical […]

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timeClip institution(s)
Department of Biology, University of Padova, Padova, Italy; Department of Statistics, University of Padova, Padova, Italy
timeClip funding source(s)
Supported by the University of Padova [CPDR075919 and CPDA119031; CPDR070805] and the Italian Association for Cancer Research [AIRC fellowship n.14982].

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