timecourse protocols

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timecourse specifications

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Unique identifier OMICS_01980
Name timecourse
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.52.0
Stability Stable
Requirements
methods, stats, graphics, Biobase, MASS, marray, R(>=2.1.1), limma(>=1.8.6)
Maintained Yes

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timecourse in pipelines

 (2)
2016
PMCID: 4835787
PMID: 27090213
DOI: 10.1038/srep24545

[…] genes were identified by deseq (padj < 0.01,fold change > 10). individual gene expression was analyzed using “timecourse” package from r (http://www.bioconductor.org/packages/release/bioc/html/timecourse.html). hierarchical clustering was performed by mev package (http://www.tm4.org/mev.html). all de genes were then imported into the david website for functional and pathway enrichment […]

2015
PMCID: 4609079
PMID: 26475439
DOI: 10.1186/s12861-015-0079-4

[…] 3: figure s2. , competing interests , authors declare that they have no competing interests., austhors’ contributions , mk designed the study and perfomed most of the experiments. ds performed timecourse qpcr analysis after gata6 activation, my performed dna maicroarray and western blot. mk and hn analyzed the results and wrote the manuscript. all authors read and approved the final […]

timecourse in publications

 (1313)
PMCID: 5951153
PMID: 29759982
DOI: 10.15252/msb.20177997

[…] kirschner, ). we measured the abundances of a set of 26 proteins that we selected to include known regulators of signaling and cell cycle progression, as well as several control proteins (fig a; ). timecourse analysis over the first cell cycle further showed that we could observe the expected cycling behavior of cyclin a and cyclin b (fig b). we next demonstrated that we could measure […]

PMCID: 5940779
PMID: 29740093
DOI: 10.1038/s41598-018-25581-8

[…] fundamental role in the modulating spinal dorsal horn excitability. descending modulation is altered in oa patients,, however identifying the underlying structures and mechanisms responsible and the timecourse over which central mechanisms become clinically significant necessitates the use of translationally relevant animal models., although a range of oa pain models have been developed, given […]

PMCID: 5932845
PMID: 29720228
DOI: 10.1186/s13041-018-0367-6

[…] in all tested samples was as low as 5%, which was used in all further experiments (see fig. , )., to ascertain the kinetics of oligodendrocyte differentiation induced by treg-conditioned media timecourse experiments were performed. treg-conditioned media consistently enhanced oligodendrocyte differentiation robustly after 5 days of treatment (see fig. ) with signs of enhanced […]

PMCID: 5929533
PMID: 29715315
DOI: 10.1371/journal.pone.0196678

[…] are undoubtedly complex and the data do not have sufficient resolution to resolve alternative models., illustrates the timecourses of area changes following addition of each modulator. since the timecourse observed for a given modulator was found to be largely independent of the sensor background, each timecourse is averaged over different backgrounds. notably, after addition of either […]

PMCID: 5932184
PMID: 29755312
DOI: 10.3389/fnins.2018.00268

[…] illustrated in figure , distortions are appropriately taken into account by the fieldmap which is a prerequisite to accurate anatomical localization of activity when interpolation of the gray-matter timecourse is used with limited smoothing. the reduction of measures of signal variability reflects the removal of sources of variance with high-frequency characteristics that are inconsistent […]

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