TimeScapes specifications

Information


Unique identifier OMICS_26785
Name TimeScapes
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.5
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Willy Wriggers

Publications for TimeScapes

TimeScapes citation

library_books

DNA binding protects p53 from interactions with cofactors involved in transcription independent functions

2016
Nucleic Acids Res
PMCID: 5100575
PMID: 27604871
DOI: 10.1093/nar/gkw770

[…] mulations, especially considering the limitations associated to PCA analyses of conventional MD simulations (,,–), we also employed a method based on the so-called ‘higher-order statistics’ using the TimeScapes software (). This analysis is based on monitoring the time-dependent formation and breaking of side-chain contacts in MD trajectories to pinpoint conformational rearrangements. We performed […]

TimeScapes institution(s)
Institute of Biomedical Engineering, Old Dominion University, Norfolk, VA, USA; Department of Mechanical and Aerospace Engineering, Old Dominion University, Norfolk, VA, USA; Frank Reidy Research Center for Bioelectrics, Old Dominion University, Norfolk, VA, USA
TimeScapes funding source(s)
Supported in part by the Frank Batten endowment to WW and by the National Institutes of Health grant R01GM62968 and by the Air Force Office of Scientific Research (FA9550-15-1-0517 and FA9550-14- 1-0123).

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