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Protocols

TINA specifications

Information


Unique identifier OMICS_28312
Name TINA
Alternative name TINA Is No Acronym
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
License GNU Lesser General Public License version 3.0
Computer skills Medium
Version 5.0
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline TINA Team
  • person_outline Paul Tar

Additional information


http://developer.tina-vision.net/wiki/index.php

Publications for TINA Is No Acronym

TINA citations

 (13)
library_books

Evolution of a complex phenotype with biphasic ontogeny: Contribution of development versus function and climatic variation to skull modularity in toads

2017
Ecol Evol
PMCID: 5743631
PMID: 29299255
DOI: 10.1002/ece3.3592

[…] es as described in Simon & Marroig ().We placed 22 landmarks in each toad skull at bone sutures or bone processes (Figure , Table ), so that we could assume their homology across all species. We used TINA Manual Landmarking Tool software (Schunke et al., ) to place landmarks in the 3D skull images. From these landmarks, we extracted 21 linear distances spread through the whole skull and allocated […]

call_split

A data driven statistical model that estimates measurement uncertainty improves interpretation of ADC reproducibility: a multi site study of liver metastases

2017
Sci Rep
PMCID: 5658431
PMID: 29075009
DOI: 10.1038/s41598-017-14625-0
call_split See protocol

[…] The full dataset of mean and median ADC values calculated from all the ROIs defined for this study, are freely available within the following document:http://www.tina-vision.net/docs/memos/2014-007.pdf […]

library_books

The Role of Alternative Splicing and Differential Gene Expression in Cichlid Adaptive Radiation

2017
Genome Biol Evol
PMCID: 5737861
PMID: 29036566
DOI: 10.1093/gbe/evx204

[…] n phosphate buffered saline for at least 6 days. A Scanco µCT 40 (SCANCO Medical AG, Brüttisellen Switzerland) collected microcomputed tomography (micro-CT) images of the head of each individual; the TINA Geometric Morphometrics Toolkit combined these into 3D reconstructions (). Landmarks and semilandmarks ( and fig. S2, online) were placed on a 2D projection of each reconstruction using tpsDig2 […]

library_books

NPTX2 and cognitive dysfunction in Alzheimer’s Disease

2017
eLife
PMCID: 5404919
PMID: 28440221
DOI: 10.7554/eLife.23798.027

[…] ndary antibodies for 1 hr at room temperature (RT). Immunoreactive bands were visualized by the enhanced chemiluminescent substrate (ECL, Pierce) on X-ray film and quantified using the image software TINA (www.tina-vision.net). Actin and PSD95 were used as loading controls. Proteins migrating similarly in SDS-PAGE gel were assayed on different blots without stripping. […]

library_books

Elevated monocyte phosphorylated p38 in nearby employees after a chemical explosion

2016
Sci Rep
PMCID: 4933906
PMID: 27380711
DOI: 10.1038/srep29060

[…] Serum hs-CRP was determined with an immuno assay (Tina-quant®/Modular P system (Roche)). […]

library_books

Craniofacial shape transition across the house mouse hybrid zone: implications for the genetic architecture and evolution of between species differences

2016
PMCID: 4896993
PMID: 27216933
DOI: 10.1007/s00427-016-0550-7

[…] nco, Bruettisellen, Switzerland). Energy and current were set to 70 kVp and 177 μA; medium resolution was used generating a voxel size of 21 μm. 3D cross sections were reconstructed and imported into TINA tool (Schunke et al. ) where 44 3D-landmarks were located in the skull, and 13 3D-landmarks were located in each hemimandible.A subset of 178 mice was previously phenotyped for craniofacial shape […]

Citations

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TINA institution(s)
Division of Informatics, Imaging and Data Science, Manchester, UK; Division of Pharmacy and Optometry, Manchester Pharmacy School, Manchester, UK; Division of Cancer Sciences, University of Manchester, The Christie Hospital NHS Trust, Manchester, UK; Department of Radiology, The Christie Hospital NHS Trust, Manchester, UK
TINA funding source(s)
Supported by the Leverhulme Trust funding [grant number RPG-2014-019], a Royal College of Radiologists Small Project Grant, a Cancer Research UK (CRUK) Clinician Scientist award [grant number C19221/A22746] and CRUK and EPSRC Cancer Imaging Centre in Cambridge and Manchester funding to The University of Manchester [grant number C8742/A18097].

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